View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_15 (Length: 253)
Name: NF18978_low_15
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 43235169 - 43235259
Alignment:
| Q |
132 |
cgccatttctagcatagtgaggtaagcaatctatgacagttcataactatggaatatgaaacagtcaacaacgatgcctctttttgaagcatt |
224 |
Q |
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| T |
43235169 |
cgccatttctagcatagtgaggtaagcaatct--gacagttcataactatggaatatggaacagtcaacaaccatgcctctttttgaagcatt |
43235259 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 12472334 - 12472380
Alignment:
| Q |
92 |
catttatggttcagaccaagtagaaaccaaaatttcatatcgccatt |
138 |
Q |
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| T |
12472334 |
catttatggttcagaccaagtagaaaccaaaatttcatatctccatt |
12472380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 12472417 - 12472445
Alignment:
| Q |
132 |
cgccatttctagcatagtgaggtaagcaa |
160 |
Q |
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| T |
12472417 |
cgccatttctagcatagtgaggtaagcaa |
12472445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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