View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_16 (Length: 252)
Name: NF18978_low_16
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 43505308 - 43505461
Alignment:
| Q |
80 |
ggaccatcccaagattgtttccattcccaacccacactgctgaccgaaccacgcactctaagcatctttcctttggaggactcatgtttgaaggttgtcg |
179 |
Q |
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| T |
43505308 |
ggaccatcccaagattgtttccattcccaacccacactgttgaccgaaccacgcactctaagcatctttcctttggaggactcatgtttgaaggttgtcg |
43505407 |
T |
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| Q |
180 |
actgtcacgagattttgacttagctcagttagaactagaaggctttagtgaccc |
233 |
Q |
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| T |
43505408 |
actgtcacgagattttgacttagctcagttagaactagaaggctttagtgaccc |
43505461 |
T |
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