View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_2 (Length: 537)
Name: NF18978_low_2
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 314 - 522
Target Start/End: Complemental strand, 4141724 - 4141516
Alignment:
| Q |
314 |
gataaagttaacaaagcttatgaatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
413 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141724 |
gatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
4141625 |
T |
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| Q |
414 |
cttctcaaagctaagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttcaag |
513 |
Q |
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| T |
4141624 |
cttctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacatagtcaaacaatttcaag |
4141525 |
T |
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| Q |
514 |
ggtgtttgt |
522 |
Q |
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||||||||| |
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| T |
4141524 |
ggtgtttgt |
4141516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 4142314 - 4142240
Alignment:
| Q |
14 |
agaacacaaagtagacaacggtaccataaagagaccagctgcagcatgagcagcactgtcatatagaaaataagt |
88 |
Q |
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| T |
4142314 |
agaacacaaagtcgacatcagtaccataaagagaccagctgcaacacgagcagcactgtcatatagaaaacaagt |
4142240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 4141880 - 4141824
Alignment:
| Q |
172 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
228 |
Q |
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| T |
4141880 |
aaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcc |
4141824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 4141998 - 4141956
Alignment:
| Q |
132 |
aagtgtaattcttcgatcattcggagcagcttatttctgtaaa |
174 |
Q |
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| T |
4141998 |
aagtgtaattctttgatcatttggagctgcttatttctgtaaa |
4141956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 314 - 457
Target Start/End: Original strand, 3854914 - 3855060
Alignment:
| Q |
314 |
gataaagttaacaaagcttatgaatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatg---ataatattcctcatc |
410 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
3854914 |
gataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgacaataatattcctcatc |
3855013 |
T |
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| Q |
411 |
ctccttctcaaagctaagctccatatgagttaaattgaaaaactgag |
457 |
Q |
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| T |
3855014 |
ctctttctcaaagctaagctccacatgagttaaattgaaaaactgag |
3855060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 3854777 - 3854833
Alignment:
| Q |
172 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
228 |
Q |
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| T |
3854777 |
aaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 1882232 - 1882185
Alignment:
| Q |
425 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
472 |
Q |
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|||||||||||||||||||||||| ||| |||| ||||||||| |||| |
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| T |
1882232 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
1882185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 1882311 - 1882267
Alignment:
| Q |
349 |
tgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaa |
393 |
Q |
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| T |
1882311 |
tgaagagaggggcaggcggagacgaatttgtttaaccaatcccaa |
1882267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 41542101 - 41542054
Alignment:
| Q |
425 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
472 |
Q |
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| T |
41542101 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
41542054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 25126846 - 25126882
Alignment:
| Q |
412 |
tccttctcaaagctaagctccatatgagttaaattga |
448 |
Q |
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| T |
25126846 |
tcctcctcaaacctaagctccatatgagttaaattga |
25126882 |
T |
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