View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_3 (Length: 467)
Name: NF18978_low_3
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 40 - 450
Target Start/End: Complemental strand, 34519898 - 34519486
Alignment:
| Q |
40 |
atcatgttgcatgtttttaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
139 |
Q |
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| T |
34519898 |
atcatgttgcatgttttgaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
34519799 |
T |
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| Q |
140 |
t--gcttattttgaagcaaaacaaaggaccaatttcttctaaaagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
237 |
Q |
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| T |
34519798 |
tttgcttattttgaagcaaaacaaaggaccaatttcttctaaaagcacaatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
34519699 |
T |
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| Q |
238 |
gggcccagaccttcatgggctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
337 |
Q |
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| T |
34519698 |
gggcccagaccttcatgagctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
34519599 |
T |
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| Q |
338 |
tcttctatacaaaacatattgatacggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaa |
437 |
Q |
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| T |
34519598 |
tcttctatacaaaacatattgatatggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaa |
34519499 |
T |
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| Q |
438 |
aagatatcttatc |
450 |
Q |
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| T |
34519498 |
aagatatcttatc |
34519486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 30739961 - 30739863
Alignment:
| Q |
180 |
aagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgggctaatgatccctgtaaaataga |
278 |
Q |
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| T |
30739961 |
aagcgtaatcttgaaaatgaataaaagctgggaatgaattcattgccaccaagaaacaggtcccaaaccttcatgatataatgatccctgtaaaataga |
30739863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 437
Target Start/End: Complemental strand, 30739778 - 30739687
Alignment:
| Q |
346 |
acaaaacatattgatacggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaa |
437 |
Q |
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|||||| ||||||||| |||||||| |||| |||| |||||| ||| ||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
30739778 |
acaaaagatattgatatggcaagtaattcatacacgatttcttgaattggtttttttatgatgcaatcaatgagatttcggttcataatcaa |
30739687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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