View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18978_low_4 (Length: 429)
Name: NF18978_low_4
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 33992299 - 33992695
Alignment:
| Q |
8 |
cgaagaatataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcagtccagtttatttttacatgtatattaatcaagg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33992299 |
cgaaaaatataattcaggagaacatcacgaacataagtgtaagcatatattttatgtcattcatcagtccagtttttttttacatgtatattaatcaagg |
33992398 |
T |
|
| Q |
108 |
tttaaatgaggtctcctattttcaatagtttaattatttatatttatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992399 |
tttaaatgaggtctcctattttcaatagtttaattatt------tatatttatatgacatatagtgcaacatatgattacatttcatgaaaaatatttaa |
33992492 |
T |
|
| Q |
208 |
acaacttgcagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33992493 |
acaacttgcagctccatagtagaagaagtggaaatgggatcagaagagctaaacaagaaccttttacagcatcaaaacccttcagaggaggatgaagagt |
33992592 |
T |
|
| Q |
308 |
cactaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgc |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992593 |
ccctaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgc |
33992692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 227 - 410
Target Start/End: Original strand, 33982754 - 33982937
Alignment:
| Q |
227 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagtcactaaggaaaagggtatg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
33982754 |
tagaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaatacttcagaggaggaagaagagccactaaggaaaagagtatg |
33982853 |
T |
|
| Q |
327 |
ggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgctca |
410 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33982854 |
gaaagaaagcaagaagttgtggatagtagcaggccctgccatgttcactaggttttcaacatttggtatcatgatagttactca |
33982937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 9219525 - 9219437
Alignment:
| Q |
302 |
aagagtcactaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacattt |
390 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||| | |||||||||||| |
|
|
| T |
9219525 |
aagaatcactaaggaaaagggtatgggaagaaagcaagaagatttgggtagtggcagggcctgcaatattcacaaaattttcaacattt |
9219437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 9240596 - 9240524
Alignment:
| Q |
301 |
gaagagtcactaaggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattca |
373 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||||| ||||| ||||||| |
|
|
| T |
9240596 |
gaagaatcactaagaaaaagggtatgggaagaaagcaagaagatttggagagtagcagggcctgcaatattca |
9240524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University