View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_6 (Length: 423)
Name: NF18978_low_6
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 34986067 - 34986481
Alignment:
| Q |
1 |
cttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986067 |
cttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctatta |
34986166 |
T |
|
| Q |
101 |
taggactgatttagtcacatgctccggttcattgacaatccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986167 |
taggactgatttagtcacatgctccggttcattgacaatccacttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagtta |
34986266 |
T |
|
| Q |
201 |
caatccataaaatcaaccgcaagcctaatcaatcgtacatgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatc |
300 |
Q |
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| T |
34986267 |
caatccataaaatcaaccgcaagcctaatcaatcgtacatgacacgccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatc |
34986366 |
T |
|
| Q |
301 |
atatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986367 |
atatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttg |
34986466 |
T |
|
| Q |
401 |
tagtatttctctgct |
415 |
Q |
| |
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||||||||||||||| |
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| T |
34986467 |
tagtatttctctgct |
34986481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 34992886 - 34993289
Alignment:
| Q |
1 |
cttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992886 |
cttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctatta |
34992985 |
T |
|
| Q |
101 |
taggactgatttagtcacatgctccggttcattgacaatccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||||||| |||||||||||| | ||| |||| |
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| T |
34992986 |
taggactgatttagtcacatgctccggttcattgacaat-cacttgttcaatgagcaaacattaagagaagaagcagaccacacccttctcgtccggtta |
34993084 |
T |
|
| Q |
201 |
caatccataaaatcaaccgcaagcctaatcaatcgtacatgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatc |
300 |
Q |
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| T |
34993085 |
caatccataaaattaaccgggagtctaatcaattgtacaagatacgccacataaggtgaacataacgtgaga-tggtcttgagattccaaagtttggacc |
34993183 |
T |
|
| Q |
301 |
atatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttg |
400 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
34993184 |
atatgttctatttaat-actatgagttgcacatagtttttgtccttgtaaaatcagcatgagttttaatctatggtcctagctctttagcatccactttg |
34993282 |
T |
|
| Q |
401 |
tagtatt |
407 |
Q |
| |
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||||||| |
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| T |
34993283 |
tagtatt |
34993289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34978316 - 34978373
Alignment:
| Q |
1 |
cttaaattgccttcagtttgcaatggaattatgtgctcagaacaccatatcagccgca |
58 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
34978316 |
cttaaattgccttcagtttgcaatggaattatgcgctcagaacaccatatcagccgca |
34978373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 34986511 - 34986563
Alignment:
| Q |
316 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34986511 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
34986563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 19326104 - 19326167
Alignment:
| Q |
338 |
tttgtccttgtaaaa-tcagcatgagttttaatctatgatcctagctctttagcttccactttg |
400 |
Q |
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||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
19326104 |
tttgtccttgtaaaaatcaccatgagttttaatctatagtcctagctctttagcttcctctttg |
19326167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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