View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_7 (Length: 370)
Name: NF18978_low_7
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_7 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 1046785 - 1047152
Alignment:
| Q |
2 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1046785 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattctgtattgtcatatggtagaatgaataagtaatgaa |
1046884 |
T |
|
| Q |
102 |
actattgacgataaaacaaaatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacg |
201 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1046885 |
actattgatgataaaacaaaatgtcttcacaacttggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacg |
1046984 |
T |
|
| Q |
202 |
ggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgcta |
301 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1046985 |
ggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccg-tttattcatagctaatccagatttgccaaagagatttgcacttaatgctc |
1047083 |
T |
|
| Q |
302 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccctt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047084 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccctt |
1047152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 1053460 - 1053824
Alignment:
| Q |
2 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaa |
101 |
Q |
| |
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||||||||||||||| | | |||||| ||||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||| || || ||| |
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| T |
1053460 |
tggagactcaaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggtggaaccaagaatg---gaa |
1053556 |
T |
|
| Q |
102 |
actattgacgataaaacaaaatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacg |
201 |
Q |
| |
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| T |
1053557 |
attcttgatgagaaaactgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatg |
1053656 |
T |
|
| Q |
202 |
ggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgcta |
301 |
Q |
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| |||||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
1053657 |
gaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttg-ttcatatctaatccagatttaccaaagagatttgcacttaatgctc |
1053755 |
T |
|
| Q |
302 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccctt |
370 |
Q |
| |
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| || ||||||||||||| ||||||||||| |||||||||||||||| | |||||||| |||||||||| |
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| T |
1053756 |
ctcttaacaagtataatagggagacattctacacttctgatccagttataggttatactgactaccctt |
1053824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 365
Target Start/End: Original strand, 1044333 - 1044561
Alignment:
| Q |
136 |
tggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatct |
235 |
Q |
| |
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|||||||| ||||||||||||||||| | ||||||||| | | ||| ||||||| |||| |||||||||| |||||||||||||||| | | ||||||| |
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| T |
1044333 |
tggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatct |
1044432 |
T |
|
| Q |
236 |
tgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctaccctaaacaagtataatatggagacattctgcac |
335 |
Q |
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||| | ||| | ||||| ||| |||| |||||||||||||||||||| ||||||||||||||| | || ||||||||||||| ||||||||||| || |
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| T |
1044433 |
tgtagtttatggtcgtttg-ttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataatagggagacattctacat |
1044531 |
T |
|
| Q |
336 |
ttctgatccagttcttggttataccgacta |
365 |
Q |
| |
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||||||||| ||| ||||||| || ||||| |
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| T |
1044532 |
ttctgatccggttgttggttacactgacta |
1044561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 201 - 370
Target Start/End: Original strand, 1058921 - 1059089
Alignment:
| Q |
201 |
gggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgct |
300 |
Q |
| |
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||||||||||| ||||||||||||||| |||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
1058921 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttg-ttcttagctaatccagatttgccgaagagatttgcacttaatgct |
1059019 |
T |
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| Q |
301 |
accctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccctt |
370 |
Q |
| |
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| |||||||||||||| | || |||||||| |||||| ||||||||| | |||||||| |||||||||| |
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| T |
1059020 |
cctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactaccctt |
1059089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 146 - 365
Target Start/End: Original strand, 1033956 - 1034174
Alignment:
| Q |
146 |
gagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttac |
245 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||| | ||||| |||| ||| ||||||||||||||||| || |||||| |||||||||||| ||| |
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| T |
1033956 |
gagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttat |
1034055 |
T |
|
| Q |
246 |
gaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctaccctaaacaagtataatatggagacattctgcacttctgatcca |
345 |
Q |
| |
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| || ||| ||| |||| |||||||||||||| ||||| |||||||| || ||| | || || || ||||| | ||||||||||| |||||||||||| |
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| T |
1034056 |
ggtcg-tttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttctgatccg |
1034154 |
T |
|
| Q |
346 |
gttcttggttataccgacta |
365 |
Q |
| |
|
||| | |||||||| ||||| |
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| T |
1034155 |
gttgtaggttatacggacta |
1034174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 1071544 - 1071908
Alignment:
| Q |
2 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaa |
101 |
Q |
| |
|
||||||||| || || || | |||||| ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||| ||| || || | || | |
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|
| T |
1071544 |
tggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacggtattctttattgtcacatggtggaaccaagaa-tgat--a |
1071640 |
T |
|
| Q |
102 |
actattgacgataaaacaaaatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacg |
201 |
Q |
| |
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||| ||| || ||||| |||| | ||| | | |||||| ||||||||| ||||| | ||||||||||||| | ||| | || || ||| || | |
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| T |
1071641 |
actgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatg |
1071740 |
T |
|
| Q |
202 |
ggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgcta |
301 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| || |||| || | ||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
1071741 |
ggatcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttg-ttcttagctaatccagatttgccaaagagatttgcacttgatgctc |
1071839 |
T |
|
| Q |
302 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccctt |
370 |
Q |
| |
|
| |||||||||||||| | ||||||||| | | ||||||||||||||| |||||||| |||||||||| |
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| T |
1071840 |
ctctaaacaagtataacagggagacattttacgtttctgatccagttctaggttatactgactaccctt |
1071908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 368
Target Start/End: Original strand, 1065817 - 1066179
Alignment:
| Q |
2 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaa |
101 |
Q |
| |
|
||||||||| || || || | |||||| ||||| ||||| |||||||||||||||||||||||| | || ||||||||||| ||| || || || | |
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| T |
1065817 |
tggagactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatggtattctttactgtcatatggtggaaccaagaatgaa---a |
1065913 |
T |
|
| Q |
102 |
actattgacgataaaacaaaatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacg |
201 |
Q |
| |
|
||| ||| || ||||| |||| | ||| | | |||||| ||||||||| ||||| | ||||||||||||| | ||| | || || ||| || | |
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|
| T |
1065914 |
actgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatg |
1066013 |
T |
|
| Q |
202 |
ggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgcta |
301 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||| || | ||||| ||| |||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
1066014 |
ggatcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttg-ttcttagctaatccagatttaccaaagagatttgcacttgatgctc |
1066112 |
T |
|
| Q |
302 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactaccc |
368 |
Q |
| |
|
| || ||||| ||||| | |||||| |||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
1066113 |
ctctgaacaaatataacagggagacgttctacatttctgatccagttctaggttatactgactaccc |
1066179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 370
Target Start/End: Complemental strand, 1640625 - 1640377
Alignment:
| Q |
121 |
aatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctga |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || ||||||| ||||| || ||| ||||| ||||| ||| ||| ||||| |||| |||| ||| |
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| T |
1640625 |
aatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggattgatgccatagttga |
1640526 |
T |
|
| Q |
221 |
aaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctaccctaaacaagtataatat |
320 |
Q |
| |
|
||||| | |||||||||||||||| | || || || ||| ||||||||||||| |||||||| || || || ||||| | || ||||||||||| |
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| T |
1640525 |
aaataagacagatcttgttgcttatggtcgcttgttt-atatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataaccg |
1640427 |
T |
|
| Q |
321 |
ggagacattctgcacttctgatccagttcttggttataccgactaccctt |
370 |
Q |
| |
|
||| ||||||| ||| |||||||| ||||| |||||||| |||||||||| |
|
|
| T |
1640426 |
ggaaacattctacacatctgatccggttctcggttatacagactaccctt |
1640377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 1058746 - 1058805
Alignment:
| Q |
23 |
attggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggt |
82 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||||| | || |||||| |||| |
|
|
| T |
1058746 |
attgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggt |
1058805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 1640741 - 1640685
Alignment:
| Q |
2 |
tggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataaata |
58 |
Q |
| |
|
||||||||| ||||| | | |||||||||||| |||||||||||||||| |||||| |
|
|
| T |
1640741 |
tggagactccaatcctgaagaattggggctttatatggttaatgccctcagtaaata |
1640685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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