View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_9 (Length: 348)
Name: NF18978_low_9
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 1047280 - 1047611
Alignment:
| Q |
1 |
cagataaaaactacaccttttaatatcaactaaatcacggtgttgtcacaatttgacctaactcaccgcacatttcaacatgcatttggcccttatatag |
100 |
Q |
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| T |
1047280 |
cagataaaaactacactttttaatatcaactaaatcacggtgttgtcacaatttgacctaactcaccgcacatttcaacatgcatttggcccttatatag |
1047379 |
T |
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| Q |
101 |
ccttttacacactttcttacactacaagtaaacttctaattgcaatgaatcctaataaaatcctcccctaaactgaataatgctatagcagatcagttta |
200 |
Q |
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| T |
1047380 |
ccttttacacactttcttacactacaagtaaacttctaattgcaatgaatcctaataaaatcctcccctaaactgaatactgctatagcagatcagttta |
1047479 |
T |
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| Q |
201 |
cacaaacaacaacaaatcaatctaggaggattcacgtagtggtaaaaagaaacatagaatatgttcttactgtgaggaaaaatgattgttcattcattaa |
300 |
Q |
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| T |
1047480 |
cacaagcaacaacaaatcaatctaggaggattcacgtagtggtaaaaagaaacatagaatatgttcttactgtgaggaaaaatgattgtacattcattga |
1047579 |
T |
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| Q |
301 |
aatgtgaaatacaaagaatgatacttatttat |
332 |
Q |
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| T |
1047580 |
aatgtgaaatacaaagaatgatacttatttat |
1047611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 47145145 - 47145106
Alignment:
| Q |
293 |
ttcattaaaatgtgaaatacaaagaatgatacttatttat |
332 |
Q |
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| T |
47145145 |
ttcattgaattgtgaaatacaaagaatgatacttatttat |
47145106 |
T |
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