View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18979_high_2 (Length: 391)
Name: NF18979_high_2
Description: NF18979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18979_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 43901313 - 43900950
Alignment:
| Q |
18 |
atagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagtggaacctaaaccat |
117 |
Q |
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| T |
43901313 |
atagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagtggaacctaaaccat |
43901214 |
T |
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| Q |
118 |
attctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaattcttaatgtgtgtgcttaacattgtgcaatcattggaagaagg |
217 |
Q |
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| T |
43901213 |
attctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaattcttaatgtgtgtgcttaacattgtgcaatcattggaagaagg |
43901114 |
T |
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| Q |
218 |
gtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaagaaaagctatgattacataggagtagttgttgtagtttcctttt |
317 |
Q |
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| T |
43901113 |
gtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaagaaaagctatgattacataggagtagttgttgtagtttcctttt |
43901014 |
T |
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| Q |
318 |
gcacatgtttctgttagggtaccctcattgttattttgaccccaataaattgcaatgttctctg |
381 |
Q |
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| T |
43901013 |
gcacatgtttctgttagggtaccctcattgttattttgaccccaataaattgcaatgttctctg |
43900950 |
T |
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