View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18979_low_4 (Length: 238)
Name: NF18979_low_4
Description: NF18979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18979_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30910269 - 30910489
Alignment:
| Q |
1 |
tagtacatggctgcatgcattattatgcataaacaaagtcaacatgtttgactccaatgattcatcaaccaaaattaattgtttgtgatgtgtcttcagg |
100 |
Q |
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| T |
30910269 |
tagtacatggctgcatgcattattatgcataaacaaagtcaacatgtttgactccaatgattcatcaaccaaaattaattgtttgtgatgtgtcttcagg |
30910368 |
T |
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| Q |
101 |
atgcggtagtatggttgtggaattctccggatgaatcattggcatttattttagcggatagtggatttgatgtgtggattgtcagtgatcgtgcgtcaag |
200 |
Q |
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| T |
30910369 |
atgcggtagtatggttgtggaattctccggatgaatcattggcatttattttagcggataacggatttgatgtgtggattgtcaatgatcgtgcgtcaag |
30910468 |
T |
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| Q |
201 |
atatagttcacacacatcatt |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
30910469 |
atatagctcacacacatcatt |
30910489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 30904098 - 30904187
Alignment:
| Q |
95 |
ttcaggatgcggtagtatggttgtggaattctccggatgaatcattggcatttattttagcggatagtggatttgatgtgtggattgtca |
184 |
Q |
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| T |
30904098 |
ttcaggatgctataatatggttgttcaatactccagaagaatcattaggatttatcttagcagatagtggatttgatgtgtggcttgtca |
30904187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 11293052 - 11293250
Alignment:
| Q |
23 |
ttatgcataaacaaagtcaacatgtttgactccaatgattcatcaaccaaaattaattgtttgtgatgtgtctt--caggatgcggtagtatggttgtgg |
120 |
Q |
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| T |
11293052 |
ttatggataaacaaagttaacaaatttgactcctataatttaccaaacaagattaattacttgtgatgtgtgttttcaggatggtgtatcatggctgctg |
11293151 |
T |
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| Q |
121 |
aattctccggatgaatcattggcatttattttagcggatagtggatttgatgtgtggattgtcagtgatcgtgcgtcaagatatagttcacacacatca |
219 |
Q |
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| T |
11293152 |
aattcaccaaatgaatcattgccatttattttagcagatagtggatttgatgtgtggcttgttagtggtcgtgggtcaaaatatagctcgcactcatca |
11293250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 11299107 - 11299195
Alignment:
| Q |
131 |
atgaatcattggcatttattttagcggatagtggatttgatgtgtggattgtcagtgatcgtgcgtcaagatatagttcacacacatca |
219 |
Q |
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| T |
11299107 |
atgaatcattgccatttattttagcagatagtggttttgatgtgtggcttgtcagtggtcgtgggtcaaaatatagctcgcacatatca |
11299195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 36713407 - 36713325
Alignment:
| Q |
95 |
ttcaggatgcggtagtatggttgtggaattctccggatgaatcattggcatttattttagcggatagtggatttgatgtgtgg |
177 |
Q |
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| T |
36713407 |
ttcaggacgctgcagtatggttgttcaattctccagaagaatcattgggatttattttagcagatattggatttgatgtgtgg |
36713325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 36705891 - 36705802
Alignment:
| Q |
95 |
ttcaggatgcggtagtatggttgtggaattctccggatgaatcattggcatttattttagcggatagtggatttgatgtgtggattgtca |
184 |
Q |
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| T |
36705891 |
ttcaggatgcagcaatatggttgttcaattctccagaagaatcattaggatttattttagcagacattggatttgatgtgtggcttgtca |
36705802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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