View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1897_low_1 (Length: 585)
Name: NF1897_low_1
Description: NF1897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1897_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 1245855 - 1246380
Alignment:
| Q |
1 |
ttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtgagagtagcatgttgatttatgtgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245855 |
ttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaa--tttgttctaattttgtgagagtagcatgttgatttatgtgag |
1245952 |
T |
|
| Q |
101 |
agtagagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245953 |
agtagagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgt |
1246052 |
T |
|
| Q |
201 |
tgcagtagattattgttgctgaattttgaggtttcatgttttgtagtctgataaactttttgcaacaagcattatgatgataataagcatttggaaaaat |
300 |
Q |
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| T |
1246053 |
tgcagtagattattgttgctgaattttgaggtttcatgttttgtagtttgataaactttttgcaacaagcattatgatgataataagcatttggaaaaat |
1246152 |
T |
|
| Q |
301 |
tgtattcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246153 |
tgtattcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttg |
1246252 |
T |
|
| Q |
401 |
aagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgataatttaatgtaaagat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1246253 |
aagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgataatttaatgtaaagat |
1246352 |
T |
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| Q |
501 |
actattcttcaagtgaggttattaaaca |
528 |
Q |
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| T |
1246353 |
actattcttcaagtgaggttattaaaca |
1246380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 42010517 - 42011041
Alignment:
| Q |
1 |
ttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtgagagtagcatgttgatttatgtgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010517 |
ttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaa--tttgttctaattttgtgagagtagcatgttgatttatgtgag |
42010614 |
T |
|
| Q |
101 |
agtagagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42010615 |
agtagagttttatgctatcagatttttgtcttcatcatagagtatgagggaaatgatttttgaaatatcagtagtttggtaacaaattcagattgaatgt |
42010714 |
T |
|
| Q |
201 |
tgcagtagattattgttgctgaattttgaggtttcatgttttgtagtctgataaactttttgcaacaagcattatgatgataataagcatttggaaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42010715 |
tgcagtagattattgttgctgaattttgaggtttcatgttttatagtttgataaactttttgcaacaagcattatgatgataataagcatttggaaaa-t |
42010813 |
T |
|
| Q |
301 |
tgtattcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010814 |
tgtattcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttg |
42010913 |
T |
|
| Q |
401 |
aagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgataatttaatgtaaagat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42010914 |
aagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgataatttaatgtaaagat |
42011013 |
T |
|
| Q |
501 |
actattcttcaagtgaggttattaaaca |
528 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42011014 |
actattcttcaagtgaggttattaaaca |
42011041 |
T |
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Back To:
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