View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1897_low_2 (Length: 537)
Name: NF1897_low_2
Description: NF1897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1897_low_2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 55321080 - 55321409
Alignment:
| Q |
8 |
agattatactactttttgggagaaactatttcagtctgtaatttaaaaacaacaaaactaatatattatagcttgaaagacactataaatcactataaca |
107 |
Q |
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| T |
55321080 |
agattatattactttttgggagaaactatttcagtctgtaatttaaaaacaacaaaactaatatattatagcttgaaagacactataaatcactataaca |
55321179 |
T |
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| Q |
108 |
ttaaacaaataatactaatcaagtaataatactggggctatcatgacaatcgaaataaaaatggtgctaaccaagagaaaagcaagctacttttcgttca |
207 |
Q |
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| T |
55321180 |
tcaaacaaataatactaatcaagtaataatactggggctat---gacaatcgaaataaaaatggtgctaaccaagagaaaagcaagctacttttcattca |
55321276 |
T |
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| Q |
208 |
ttctaaagactccaaatttccactgcactatacatctaagaaagattagacattcaaaattaatttaccttattgtgcaaggataactgacttgagatca |
307 |
Q |
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| T |
55321277 |
ttctaaagactccaaatttccactgcactatacatctaagaaagattagacattcaaaattaatttaccttattgtgcaaggataactgacttgagatca |
55321376 |
T |
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| Q |
308 |
ttcactaattcctaccctgattgcatgtttaac |
340 |
Q |
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| T |
55321377 |
ttcactaattcctgccctgattgcatgtttaac |
55321409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 414 - 534
Target Start/End: Original strand, 55321757 - 55321876
Alignment:
| Q |
414 |
caattcaagatagatatttcatttatcttcttctcgaactcctgaatttgtacaaaagaacaattataaatttgaataaccataatacttttatataaat |
513 |
Q |
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| T |
55321757 |
caattcaagatagatatttcatttatcttcttctcgaactcctgaatttgtacaaaagaacaattataaatttgaataaccataatac-tttatataaat |
55321855 |
T |
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| Q |
514 |
aatgagatcttatagtcttat |
534 |
Q |
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| T |
55321856 |
aatgagatcttatagtcttat |
55321876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 537
Target Start/End: Complemental strand, 33321594 - 33321564
Alignment:
| Q |
507 |
tataaataatgagatcttatagtcttattta |
537 |
Q |
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| T |
33321594 |
tataaataatgagatcttatagtcttattta |
33321564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 537
Target Start/End: Original strand, 29595545 - 29595575
Alignment:
| Q |
507 |
tataaataatgagatcttatagtcttattta |
537 |
Q |
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| T |
29595545 |
tataaataatgagatcttatagtcttattta |
29595575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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