View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1897_low_5 (Length: 342)

Name: NF1897_low_5
Description: NF1897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1897_low_5
NF1897_low_5
[»] chr2 (5 HSPs)
chr2 (12-328)||(13370482-13370800)
chr2 (257-317)||(31475891-31475951)
chr2 (256-314)||(24544011-24544068)
chr2 (257-317)||(19012173-19012232)
chr2 (252-316)||(23389237-23389301)
[»] chr3 (2 HSPs)
chr3 (250-327)||(17132811-17132888)
chr3 (233-289)||(1085763-1085819)
[»] chr7 (2 HSPs)
chr7 (259-314)||(14628688-14628743)
chr7 (131-211)||(22969721-22969800)
[»] chr1 (2 HSPs)
chr1 (262-316)||(4521512-4521566)
chr1 (131-211)||(21880825-21880904)
[»] chr4 (1 HSPs)
chr4 (229-289)||(18553436-18553497)
[»] chr6 (1 HSPs)
chr6 (257-316)||(3634427-3634487)
[»] chr8 (4 HSPs)
chr8 (250-316)||(5892716-5892782)
chr8 (257-313)||(27814842-27814899)
chr8 (254-306)||(22454631-22454683)
chr8 (256-300)||(27662348-27662392)
[»] scaffold0270 (2 HSPs)
scaffold0270 (271-307)||(8180-8216)
scaffold0270 (271-307)||(15310-15346)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 13370800 - 13370482
Alignment:
Q  12 aagaaaaatacaagattgcaggattttctaagtccaaagagaaaatgtgggtttcgacaaggaaggacttcgacaggtgaagactttgactgatgaagac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13370800 aagaaaaatacaagattgcaggattttctaagtccaaagagaaaatgtgggtttcgacaaggaaggacttcgacatgtgaagactttgactgatgaagac 13370701  T
Q  112 ttcgatcagagaagatgcagttttcgactggagaagcctttgaaagactttgaattctctcagaagaggcaagtttgaaggttcagacacgtggtaaaca 211  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13370700 ttcgaccagagaagatgcagttttcgactggagaagcctttaaaagactttgaattctctcagaagaggcaagtttgaaggttcagacacgtggtaaaca 13370601  T
Q  212 aacagaagatgta-aaggaatgtagtttcttgccgttgatctttgcagttatttttctt-atgtataaatagtagtttttgatagaaaaaacgggtcata 309  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |    
T  13370600 aacagaagatgtagaaggaatgtagtttctagccgttgatctttgcagttattttttttcatgtataaatagtagtttttgatagaaaaaatgggtcaga 13370501  T
Q  310 aatcattattatagaattt 328  Q
    |||||||||||||||||||    
T  13370500 aatcattattatagaattt 13370482  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 31475951 - 31475891
Alignment:
Q  257 agttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatta 317  Q
    |||||||||||| ||||||| |||||||||||| |||| ||||| |||||| |||||||||    
T  31475951 agttatttttctaatgtatatatagtagtttttcataggaaaaaagggtcacaaatcatta 31475891  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 24544068 - 24544011
Alignment:
Q  256 cagttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatca 314  Q
    |||||||||| || |||||||||||||||||||  |||| |||||||||||| ||||||    
T  24544068 cagttattttact-atgtataaatagtagttttccataggaaaaacgggtcacaaatca 24544011  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 19012232 - 19012173
Alignment:
Q  257 agttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatta 317  Q
    |||||||||||||||||| | |||||||||||| |||  ||||| |||||| |||||||||    
T  19012232 agttatttttcttatgtacatatagtagtttttcatatgaaaaa-gggtcacaaatcatta 19012173  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 23389301 - 23389237
Alignment:
Q  252 tttgcagttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatt 316  Q
    ||||||||||||| |   ||||||||||| || ||||| |||| |||||||||||| ||||||||    
T  23389301 tttgcagttatttcttcgatgtataaataataatttttcataggaaaaacgggtcacaaatcatt 23389237  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 17132888 - 17132811
Alignment:
Q  250 tctttgcagttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcattattatagaatt 327  Q
    ||||||||||||||||   |||||||| |||||||||||| |||| |||||||| ||| |||||||||||||||||||    
T  17132888 tctttgcagttattttctctatgtatatatagtagtttttcataggaaaaacggttcacaaatcattattatagaatt 17132811  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 1085819 - 1085763
Alignment:
Q  233 tagtttcttgccgttgatctttgcagttatttttcttatgtataaatagtagttttt 289  Q
    ||||||||  |||||| ||| || ||||||||||||| |||||| ||||||||||||    
T  1085819 tagtttctgaccgttggtctgtgtagttatttttcttgtgtatatatagtagttttt 1085763  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 14628688 - 14628743
Alignment:
Q  259 ttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatca 314  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||| ||||||    
T  14628688 ttatttttcttatgtatatatagtagtttttcatagaaaaaaagggtcacaaatca 14628743  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 22969721 - 22969800
Alignment:
Q  131 gttttcgactggagaagcctttgaaagactttgaattctctcagaagaggcaagtttgaaggttcagacacgtggtaaaca 211  Q
    ||||| |||| ||||| |||||| | |||||||||||||  | ||| ||||||||||||||||||||||| |||| |||||    
T  22969721 gtttttgactagagaaacctttgta-gactttgaattcttgctgaaaaggcaagtttgaaggttcagacatgtggaaaaca 22969800  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 4521512 - 4521566
Alignment:
Q  262 tttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatt 316  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||    
T  4521512 tttttcttgtgtatatatagtagtttttcatagaaaaaacgggtcacaaatcatt 4521566  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 21880904 - 21880825
Alignment:
Q  131 gttttcgactggagaagcctttgaaagactttgaattctctcagaagaggcaagtttgaaggttcagacacgtggtaaaca 211  Q
    ||||| |||| ||||| |||||| | |||||||||||||  | ||| ||||||||||||||||||||||| |||| |||||    
T  21880904 gtttttgactagagaaacctttgta-gactttgaattcttgctgaaaaggcaagtttgaaggttcagacatgtggaaaaca 21880825  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 18553497 - 18553436
Alignment:
Q  229 aatgtagtttcttgccgttgatctttgcagttatttttct-tatgtataaatagtagttttt 289  Q
    ||||| |||||| || ||||||||||| |||||||||||| |||||||| ||||||||||||    
T  18553497 aatgtggtttctagcagttgatctttgtagttatttttctctatgtatatatagtagttttt 18553436  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 3634487 - 3634427
Alignment:
Q  257 agttatttt-tcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatt 316  Q
    ||||||||| ||||||| ||| |||||||||||| |||| |||||||||||| ||||||||    
T  3634487 agttattttctcttatgcatatatagtagtttttcataggaaaaacgggtcacaaatcatt 3634427  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 5892782 - 5892716
Alignment:
Q  250 tctttgcagttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatcatt 316  Q
    ||||| ||||||||||   |||||||| |||||||||||| |||  |||||||||||| ||||||||    
T  5892782 tcttttcagttattttcactatgtatatatagtagtttttcatatgaaaaacgggtcacaaatcatt 5892716  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 27814842 - 27814899
Alignment:
Q  257 agttatttt-tcttatgtataaatagtagtttttgatagaaaaaacgggtcataaatc 313  Q
    ||||||||| ||||||||||| |||||||||||  |||| ||||| ||||||||||||    
T  27814842 agttattttctcttatgtatatatagtagttttccataggaaaaaggggtcataaatc 27814899  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 22454631 - 22454683
Alignment:
Q  254 tgcagttatttttcttatgtataaatagtagtttttgatagaaaaaacgggtc 306  Q
    |||||||||||||| |||||||| |||||||||||| |||  ||||| |||||    
T  22454631 tgcagttatttttcctatgtatatatagtagtttttcataagaaaaatgggtc 22454683  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 27662392 - 27662348
Alignment:
Q  256 cagttatttttcttatgtataaatagtagtttttgatagaaaaaa 300  Q
    ||||||||||||||||||||| |||||||||| | |||| |||||    
T  27662392 cagttatttttcttatgtatatatagtagtttgtcataggaaaaa 27662348  T

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Target: scaffold0270 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 8216 - 8180
Alignment:
Q  271 tgtataaatagtagtttttgatagaaaaaacgggtca 307  Q
    |||||||||||||||||||  ||||||||||||||||    
T  8216 tgtataaatagtagtttttcttagaaaaaacgggtca 8180  T

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Target: scaffold0270; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 15346 - 15310
Alignment:
Q  271 tgtataaatagtagtttttgatagaaaaaacgggtca 307  Q
    |||||||||||||||||||  ||||||||||||||||    
T  15346 tgtataaatagtagtttttcttagaaaaaacgggtca 15310  T

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