View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1897_low_6 (Length: 278)
Name: NF1897_low_6
Description: NF1897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1897_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 11998536 - 11998769
Alignment:
| Q |
5 |
gatgtttatgcataatgacgatgttggcgtattttggcctggaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgta |
104 |
Q |
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| T |
11998536 |
gatgtttatgcataatgacgatgttggcatattttggcctggaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgta |
11998635 |
T |
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| Q |
105 |
gcaactgaacctcctcaacaaacatctagtacatctcctgatcttactttgaggctttaatatttttgtatcttaattaaattctaatattagnnnnnnn |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11998636 |
gcaactgaacctcctcaacaaacatctactacatctcctgatcttactttgaggctttaatatttttgtatcttaattaaattctaatattagttttttt |
11998735 |
T |
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| Q |
205 |
gtggcaataattaaacaactatatttctcatgttcatt |
242 |
Q |
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||||||| |||||||||| |||||||||||||||| |
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| T |
11998736 |
gtggcaa----taaacaactacatttctcatgttcatt |
11998769 |
T |
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