View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1897_low_8 (Length: 239)

Name: NF1897_low_8
Description: NF1897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1897_low_8
NF1897_low_8
[»] chr3 (2 HSPs)
chr3 (1-213)||(19210350-19210562)
chr3 (1-35)||(1757701-1757735)
[»] chr7 (4 HSPs)
chr7 (38-133)||(21356102-21356197)
chr7 (1-35)||(1079724-1079758)
chr7 (1-35)||(7388071-7388105)
chr7 (1-35)||(48103706-48103740)
[»] chr2 (1 HSPs)
chr2 (1-36)||(4227003-4227038)
[»] chr6 (5 HSPs)
chr6 (2-36)||(4379518-4379552)
chr6 (1-35)||(12735275-12735309)
chr6 (1-35)||(20480663-20480697)
chr6 (1-33)||(9581963-9581995)
chr6 (7-35)||(31895284-31895312)
[»] chr1 (4 HSPs)
chr1 (1-35)||(15668493-15668527)
chr1 (1-35)||(37493360-37493394)
chr1 (1-33)||(3573356-3573388)
chr1 (3-35)||(11661403-11661435)
[»] chr5 (1 HSPs)
chr5 (2-35)||(3630654-3630687)
[»] chr4 (1 HSPs)
chr4 (6-35)||(40172066-40172095)
[»] chr8 (1 HSPs)
chr8 (3-35)||(17693268-17693300)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 19210350 - 19210562
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgaggattactaattgttgtctagttaatagtaataaatatttagaaataaaatagaaatgagagatataa 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  19210350 cattgctccaaccaactgagttaagctcacgaggattactaattgttg-ctagttaataataataaatatttagaaataaaatagaaatgcgagatataa 19210448  T
Q  101 atggcactttagtaattgaacctattgagagggt-nnnnnnncgggggtattttagcatcacacatatttatacgatagaaaacctagagaaaagtagat 199  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19210449 atggcactttagtaattgaacctattgagagggtaaaaaaaaagggggtattttagcatcacacatatttatacgattgaaaacctagagaaaagtagat 19210548  T
Q  200 tgaagatagaagaa 213  Q
    ||||||||||||||    
T  19210549 tgaagatagaagaa 19210562  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1757701 - 1757735
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  1757701 cattgttcctaccaactgagttaagctcacgagga 1757735  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 21356197 - 21356102
Alignment:
Q  38 actaattgttgtctagttaatagtaataaatatttagaaataaaatagaaatgagagatataaatgg-cactttagtaattgaacctattgagaggg 133  Q
    ||||||||| ||| | |||| |||| || || ||||||||||||||| ||||| |||||||||| || || |||||||||||| ||||| |||||||    
T  21356197 actaattgtggtccaattaagagtagtagatgtttagaaataaaata-aaatgggagatataaaagggcaatttagtaattgagcctatagagaggg 21356102  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1079724 - 1079758
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  1079724 cattgttccaactaactgagttaagctcacgagga 1079758  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7388071 - 7388105
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  7388071 cattgtcccaaccaactgagttaagctcacgagga 7388105  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48103706 - 48103740
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  48103706 cattgtcccaaccaactgagttaagctcacgagga 48103740  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4227003 - 4227038
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgaggat 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  4227003 cattgttccaaccaattgagttaagctcacgaggat 4227038  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 4379518 - 4379552
Alignment:
Q  2 attgttccaaccaactgagttaagctcacgaggat 36  Q
    |||||||| ||||||||||||||||||||||||||    
T  4379518 attgttcctaccaactgagttaagctcacgaggat 4379552  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12735275 - 12735309
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  12735275 cattgtcccaaccaactgagttaagctcacgagga 12735309  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20480663 - 20480697
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  20480663 cattgttcctaccaactgagttaagctcacgagga 20480697  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9581995 - 9581963
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgag 33  Q
    |||||||||||||||||||| ||||||||||||    
T  9581995 cattgttccaaccaactgagctaagctcacgag 9581963  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 31895312 - 31895284
Alignment:
Q  7 tccaaccaactgagttaagctcacgagga 35  Q
    |||||||||||||||||||||||||||||    
T  31895312 tccaaccaactgagttaagctcacgagga 31895284  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15668527 - 15668493
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  15668527 cattgttccaaccaactgagttaagatcacgagga 15668493  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37493394 - 37493360
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  37493394 cattgttccaaccaactaagttaagctcacgagga 37493360  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3573356 - 3573388
Alignment:
Q  1 cattgttccaaccaactgagttaagctcacgag 33  Q
    ||||||||| |||||||||||||||||||||||    
T  3573356 cattgttcctaccaactgagttaagctcacgag 3573388  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 11661435 - 11661403
Alignment:
Q  3 ttgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||| |||||||||||||||||||||||||    
T  11661435 ttgttcctaccaactgagttaagctcacgagga 11661403  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 3630687 - 3630654
Alignment:
Q  2 attgttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  3630687 attgttccaaccaactgagctaagctcacgagga 3630654  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 40172095 - 40172066
Alignment:
Q  6 ttccaaccaactgagttaagctcacgagga 35  Q
    ||||||||||||||||||||||||||||||    
T  40172095 ttccaaccaactgagttaagctcacgagga 40172066  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 17693300 - 17693268
Alignment:
Q  3 ttgttccaaccaactgagttaagctcacgagga 35  Q
    |||| ||||||||||||||||||||||||||||    
T  17693300 ttgtcccaaccaactgagttaagctcacgagga 17693268  T

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