View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18980_high_1 (Length: 628)
Name: NF18980_high_1
Description: NF18980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18980_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 395 - 607
Target Start/End: Complemental strand, 1516204 - 1515992
Alignment:
| Q |
395 |
acatgtgattttggatggatactaaaagctgaaataggcttataaatatgttatgagttgcactttgtctagttaattatctcttttgtcgtcagattga |
494 |
Q |
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| T |
1516204 |
acatgtgattttggatggatactagaagttgaaataggcttataaatatgttatgagttgcattttggccagttaattatctcttttatcgtcatattga |
1516105 |
T |
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| Q |
495 |
ttatgtagctatttgggatacgtcatagagtcaaagatgtttattctattggtggttggcagctagatcaattatacacttatttatgcctcatatttgg |
594 |
Q |
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| T |
1516104 |
ttatgtagctgtttgggatacgtcatagagtcaaagatatttattctattggtggttggcacctagataaattatacacttatttatgcctcatatttgg |
1516005 |
T |
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| Q |
595 |
aagctttgatcaa |
607 |
Q |
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| T |
1516004 |
aagctttgatcaa |
1515992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 1516584 - 1516464
Alignment:
| Q |
13 |
agcaaagggacgtcaatgggttgagataaatcacggagtttctccgcggccatggcgaagagagaaagtgataaaccctagaaaataagcgccgttgaaa |
112 |
Q |
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| T |
1516584 |
agcaaagggacgtcaatgggttgagataaatcacggagtttctccgcggccatggcgaagagagaaagtgataaaccctagaaaataagcgccgttgaaa |
1516485 |
T |
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| Q |
113 |
taagcgattattggaagatgt |
133 |
Q |
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| T |
1516484 |
taagcgattattggaagatgt |
1516464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 1516306 - 1516243
Alignment:
| Q |
294 |
gtgaaaaataagtgcttatcttatgataa-tgtttatgaataagttggttctagataaaataga |
356 |
Q |
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| T |
1516306 |
gtgaaaaataagtgtttatcttatgataaatgtttatgaataagttggttctagataaaataga |
1516243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 1516404 - 1516355
Alignment:
| Q |
196 |
tttttagagttttatagtcgaaggaagaatagcttcaatttgaagcagag |
245 |
Q |
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| T |
1516404 |
tttttggagttttatagtccaaggaagaatagcttcaatttgaagcagag |
1516355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 4198124 - 4198047
Alignment:
| Q |
16 |
aaagggacgtcaatgggttgagataaatcacggagtttctccgcggccatggcgaagagagaaagtgataaaccctagaa |
95 |
Q |
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| T |
4198124 |
aaagggacatcaatgggttgggataaatctaggagtttgttggcggccatggtgaagggag--agtgataaaccctagaa |
4198047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 575
Target Start/End: Original strand, 51917933 - 51917989
Alignment:
| Q |
519 |
atagagtcaaagatgtttattctattggtggttggcagctagatcaattatacactt |
575 |
Q |
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| T |
51917933 |
atagaatcaaagatgtctattctacttatggttggcagctaaatcaattatacactt |
51917989 |
T |
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