View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18980_high_6 (Length: 212)
Name: NF18980_high_6
Description: NF18980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18980_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 30904275 - 30904079
Alignment:
| Q |
16 |
atgaaatacacatatatcataagtctaggaaccgtgtcagtaggactcagtgaagtgtgcgtggtgctatattttgtgccgcgaccattgacaagccaca |
115 |
Q |
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| T |
30904275 |
atgaaatacacatatatcataagtctaggaaccgtgtcagtaggactcagtgaagtgtgcgtggtgctatattttgtgccgcgaccattgacaagccaca |
30904176 |
T |
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| Q |
116 |
catcaaatccactgtctgctaagataaatcctaatgattcttctggagtattgaacaaccatattatagcatcctgaaatgaatcataggtgtcaat |
212 |
Q |
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| T |
30904175 |
catcaaatccactatctgctaagataaatcctaatgattcttctggagtattgaacaaccatattatagcatcctgaaatgaatcataggtgtcaat |
30904079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 30910455 - 30910363
Alignment:
| Q |
101 |
cattgacaagccacacatcaaatccactgtctgctaagataaatcctaatgattcttctggagtattgaacaaccatattatagcatcctgaa |
193 |
Q |
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| T |
30910455 |
cattgacaatccacacatcaaatccgttatccgctaaaataaatgccaatgattcatccggagaattccacaaccatactaccgcatcctgaa |
30910363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 36705762 - 36705893
Alignment:
| Q |
64 |
agtgaagtgtgcgtggtgctatattttgtgccgcgaccattgacaagccacacatcaaatccactgtctgctaagataaatcctaatgattcttctggag |
163 |
Q |
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| T |
36705762 |
agtgatgtgtgcatggtgctatattttgtgccgcggccattgacaagccacacatcaaatccaatgtctgctaaaataaatcctaatgattcttctggag |
36705861 |
T |
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| Q |
164 |
tattgaacaaccatattatagcatcctgaaat |
195 |
Q |
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| T |
36705862 |
aattgaacaaccatattgctgcatcctgaaat |
36705893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 36713259 - 36713425
Alignment:
| Q |
45 |
aaccgtgtcagtaggactcagtgaagtgtgcgtggtgctatattttgtgccgcgaccattgacaagccacacatcaaatccactgtctgctaagataaat |
144 |
Q |
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| T |
36713259 |
aaccatgtcattgggacttagtgatgtgtggttggtgctatattttgtgcctcgaccattgataagccacacatcaaatccaatatctgctaaaataaat |
36713358 |
T |
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| Q |
145 |
cctaatgattcttctggagtattgaacaaccatattatagcatcctgaaatgaatcataggtgtcaa |
211 |
Q |
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| T |
36713359 |
cccaatgattcttctggagaattgaacaaccatactgcagcgtcctgaaataaatcataggagtcaa |
36713425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 36663284 - 36663156
Alignment:
| Q |
77 |
tggtgctatattttgtgccgcgaccattgacaagccacacatcaaatccactgtctgctaagataaatcctaatgattcttctggagtattgaacaacca |
176 |
Q |
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| T |
36663284 |
tggtgctatattttgtgccacgaccattgacaagccacacatcaactccattgtcggctaagataaatcccaacgattcttctggtgaattgaacaacca |
36663185 |
T |
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| Q |
177 |
tattatagcatcctgaaatgaatcatagg |
205 |
Q |
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| T |
36663184 |
tattctagcatcctaaaattaattatagg |
36663156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 11293238 - 11293175
Alignment:
| Q |
81 |
gctatattttgtgccgcgaccattgacaagccacacatcaaatccactgtctgctaagataaat |
144 |
Q |
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| T |
11293238 |
gctatattttgacccacgaccactaacaagccacacatcaaatccactatctgctaaaataaat |
11293175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 11299183 - 11299120
Alignment:
| Q |
81 |
gctatattttgtgccgcgaccattgacaagccacacatcaaatccactgtctgctaagataaat |
144 |
Q |
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| T |
11299183 |
gctatattttgacccacgaccactgacaagccacacatcaaaaccactatctgctaaaataaat |
11299120 |
T |
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