View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_high_1 (Length: 529)
Name: NF18981_high_1
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 38 - 517
Target Start/End: Original strand, 11378908 - 11379394
Alignment:
| Q |
38 |
aagaaacagatcttctgagtgtaattgtctcatcatttagctcttcacaagtaaccagaaaatgatcatatgttaagatagattctatccaaagagagtt |
137 |
Q |
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| T |
11378908 |
aagaaacagatcttctgagtttaattgtctcatcatttagctcttcacaagtaaccagaaaatgatcatatgttaagatagattctatccgaagagagtt |
11379007 |
T |
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| Q |
138 |
ttgctcatctttctcatagtttgcatttggaattttgaaaaggtttttagttgcttttataaaaaccaattaaaaattctattttattactatgttttat |
237 |
Q |
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| T |
11379008 |
ttgctcatctttctcatagtttgcatttggaattttgaaaaggtttttagttgcttttataaaaaccaattaaaaattctattttattactatgttttat |
11379107 |
T |
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| Q |
238 |
atat----nnnnnnnctgtgaagtgtcatcttctgatgtcaagaaagcttttacattactcacataaatatcctaaaacatctgaatttctagtaaataa |
333 |
Q |
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|||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11379108 |
atatataaaaaaaaagtgtgaagtgtca---tctgatgtcaagagagcttttacattactcacataaatatcctaaaacatctgaatttcaagtaaataa |
11379204 |
T |
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| Q |
334 |
actcataatacaagacttggattgccttgatctatatttttctttttgccttgtaaattatcaaaacataattatatt------cacatgcacactagtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11379205 |
actcataatacaagacttggattgccttgatctatatttttctttttgccttgtaaattatcaaaacataattatattcacatgcacatgcacactagtt |
11379304 |
T |
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| Q |
428 |
catgtaattttacaccatctccaaattcttcactctagtaaaaaagttggttgtgtttgaagcttctttatctttctcctttttgctctg |
517 |
Q |
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| T |
11379305 |
catgtaattttacaccatctccaaattcttcactctagtaaaaaagttggttgtgtttgaagcttctttatctttctcctgtttgctctg |
11379394 |
T |
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