View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_high_3 (Length: 487)
Name: NF18981_high_3
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 189 - 477
Target Start/End: Complemental strand, 41605484 - 41605196
Alignment:
| Q |
189 |
gctacaaattttgttgatgtatatgtgtataacatataatataatagctttgtgatctacttgtttaggataatggctgaggaatttgggtaccaaagaa |
288 |
Q |
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| T |
41605484 |
gctacaaattttgtggatgtatatgtgtataacatataatataatagctttgtgatctacttgtttaggataatggctgaggaatttgggtaccaaagaa |
41605385 |
T |
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| Q |
289 |
gtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaagatggtaagcactatagatt |
388 |
Q |
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| T |
41605384 |
gtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaagatggtaagcactatagatt |
41605285 |
T |
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| Q |
389 |
tttcagacagcttgaagcaatatgtggagaaccaaacacaaattctcatgcctcaactttagacaaaattacccctaatgcttcctttg |
477 |
Q |
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| T |
41605284 |
tttcagacagcttgaagcaatatgtggagaaccaaacacaaattctcacgcctcaactttagacaaaattacccctaatgcttcctttg |
41605196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 41605656 - 41605566
Alignment:
| Q |
19 |
taaatagctaaatttatttaaacaactcaaatatgcacaaagctataataaatgtggttgatataatatcgatgattgcagtagtgttctg |
109 |
Q |
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| T |
41605656 |
taaatagctaaatttacttaaacaactcaaatatgcacaaagctataataaatgtggttgatataatatcgatgattgcagtagtgttctg |
41605566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 379
Target Start/End: Original strand, 26599188 - 26599314
Alignment:
| Q |
253 |
ttaggataatggctgaggaatttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaagg |
352 |
Q |
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| T |
26599188 |
ttaggataatgtctgaagaacatgcatatcaaaggagtggaaaaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaagg |
26599287 |
T |
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| Q |
353 |
taaagctagtagacaagatggtaagca |
379 |
Q |
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| T |
26599288 |
taaagcaggaaggcatgatggtaagca |
26599314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 44554625 - 44554560
Alignment:
| Q |
274 |
ttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaaga |
339 |
Q |
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| T |
44554625 |
ttgggtaccacagaagttcaaagaaatgcaaagagaagtttgagaatgtttataagtatcacaaga |
44554560 |
T |
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