View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18981_low_1 (Length: 614)
Name: NF18981_low_1
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 593
Target Start/End: Original strand, 1515863 - 1516445
Alignment:
| Q |
12 |
atgaagtaatcatcatttgaatatagcaaattccgtaaagacagttaaaaatatgaataacaannnnnnn-accctgacctgacaatactttgtttattg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1515863 |
atgaagtaatcatcatttgaatatagcaaattctgtaaagacagttaaaaatatcaataacaattttttttaccctgacctgacaatactttgtttattg |
1515962 |
T |
|
| Q |
111 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggttaaaactctttctagttgaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1515963 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggtttaaactctttctagttgaag |
1516062 |
T |
|
| Q |
211 |
atataatttttacttctttcctattttcttatatctccaattctaaaaacatgtaggaacatccagagaaatatgatattgaaaggctgactggaaatga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
1516063 |
atataatttttacttctttcctattttcttatatctccaattctaaaaaaatgtaggaacatccagagaaatatgatattgaagggctaactggaaatga |
1516162 |
T |
|
| Q |
311 |
atctgaagttattgaaatggtcagtcaatgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516163 |
atctgaagttattgaaatggtcagtcaacgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaata |
1516262 |
T |
|
| Q |
411 |
gtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516263 |
gtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagag |
1516362 |
T |
|
| Q |
511 |
tcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcac |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516363 |
tcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcac |
1516445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 111 - 347
Target Start/End: Complemental strand, 36614023 - 36613768
Alignment:
| Q |
111 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggttaaaact--ctttctagttga |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||| || |||||| |||| |
|
|
| T |
36614023 |
atgcagttttagggaaggttaaagacttcctaggagtgatgtcagaagcaaataagcggttggagcatgatgcaaaggttaaagcttgatttctaattga |
36613924 |
T |
|
| Q |
209 |
agatataatttttac---------------ttctttcctattttcttatatctccaattctaaaaac--atgtaggaacatccagagaaatatgatattg |
291 |
Q |
| |
|
||||||||||||||| || || ||||||| |||||| ||||||||| |||||| |||||||| |||||||||||||||||| ||| |
|
|
| T |
36613923 |
agatataatttttaccactttgcagatatttttttccctatttccttatacctccaattcaaaaaacaaatgtaggaccatccagagaaatatgattttg |
36613824 |
T |
|
| Q |
292 |
aaaggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatc |
347 |
Q |
| |
|
|| ||| || ||||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
36613823 |
aagagctaacgggaaatgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 447 - 588
Target Start/End: Complemental strand, 36613686 - 36613548
Alignment:
| Q |
447 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
546 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
|
| Q |
547 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagt |
588 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagt |
36613548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University