View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_11 (Length: 331)
Name: NF18981_low_11
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 47820067 - 47820387
Alignment:
| Q |
1 |
catgatggggtggtgggagagttttattgtaatcccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgg |
100 |
Q |
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| T |
47820067 |
catgatggggtggtgggagagttttattgtaatcccgccaaatttatttatcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgg |
47820166 |
T |
|
| Q |
101 |
gggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47820167 |
gggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaat---ttggtggtggatattgtgg |
47820263 |
T |
|
| Q |
201 |
aggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgagggactgtctctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
47820264 |
aggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttggaatccaagggactgtctctc |
47820363 |
T |
|
| Q |
301 |
gcggttgtgctaatttgatgatgt |
324 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
47820364 |
gcggttgtgctaatttgaggatgt |
47820387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 37035417 - 37035725
Alignment:
| Q |
5 |
atggggtggtgggagagttttattgtaatcccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggt |
104 |
Q |
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||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | || |||||||||| ||| ||||||||| ||||| |
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| T |
37035417 |
atggggtggtgggagaggtttattgtaattccgcctaatttatttgtcttatgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggt |
37035516 |
T |
|
| Q |
105 |
taagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggagga |
204 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
37035517 |
taagattaatttggcatgttacgatttgggttttatggaaagctagaaatgacaagatttttaataatcggaatccggaggtggtggatattgtggagga |
37035616 |
T |
|
| Q |
205 |
tattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgagggactgtctctcgcgg |
304 |
Q |
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||||||||| | |||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||| | |||||||||| || || ||||| |
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| T |
37035617 |
tattaaggtattgacttggcggtggtcgttggagataattgcaatgcctccttgtatgttctatgagtggtgttgggatccgagggaatgcctttcgcga |
37035716 |
T |
|
| Q |
305 |
ttgtgctaa |
313 |
Q |
| |
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||||||||| |
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| T |
37035717 |
ttgtgctaa |
37035725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 12825602 - 12825341
Alignment:
| Q |
30 |
taatcccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgat |
129 |
Q |
| |
|
|||| ||||| |||||||| || | |||||||||||||| ||||| |||||||| ||| | || ||| || |||||| | ||| ||||| | |||| |
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| T |
12825602 |
taattccgcctaatttattcgttctttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacgag |
12825503 |
T |
|
| Q |
130 |
ttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtgg |
229 |
Q |
| |
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|| |||||| |||||||| |||||||| ||||| || ||||||||||| | | ||||| || || ||||| ||| | |||||| | |||||| ||||| |
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| T |
12825502 |
tttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtgg |
12825403 |
T |
|
| Q |
230 |
tcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgaggga |
291 |
Q |
| |
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|||||||| | ||| | ||| |||| ||||||| ||||| ||||||| |||||||||||| |
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| T |
12825402 |
tcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatccgaggga |
12825341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 34774782 - 34774684
Alignment:
| Q |
56 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
154 |
Q |
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||||||||||||||||| ||||||||||| ||||| | |||| || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
34774782 |
tgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
34774684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 42748968 - 42748870
Alignment:
| Q |
56 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
154 |
Q |
| |
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|||||||||||| |||| ||||||||||| ||||| | |||| | || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
42748968 |
tgggagtgttggagcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtgttatggaaagctaggaat |
42748870 |
T |
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