View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_14 (Length: 240)
Name: NF18981_low_14
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14536772 - 14536545
Alignment:
| Q |
1 |
tataacactgatcttgagaatgaaggaacttatccacctcttgttgaagcttttcgccacaagattcttcaagctgatagtgttctttttgcttctcctg |
100 |
Q |
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| T |
14536772 |
tataacactgatcttgagaatgaaggaacttatccacctcttgttgaagcttttcgccacaagattcttcaagctgatagtgttctttttgcttctcctg |
14536673 |
T |
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| Q |
101 |
agtataactactctgtcacaggtacattttcttgtgcttctatcttgatttagattg-----nnnnnnnatataacagctactagtaatagaagaataaa |
195 |
Q |
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| T |
14536672 |
agtataactactctgtcacaggtacattttcttgtgcttctatcttgatttagattgttttttttttttatataacagctacaagtaatagaagaataaa |
14536573 |
T |
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| Q |
196 |
gaaaccgaaaattgcaagattatgagac |
223 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14536572 |
gaaaccgaaaattgcaagattatgagac |
14536545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 5325589 - 5325469
Alignment:
| Q |
4 |
aacactgatcttgagaatgaaggaacttatccacctcttgttgaagcttttcgccacaagattcttcaagctgatagtgttctttttgcttctcctgagt |
103 |
Q |
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||||||||||||||||| |||||||||| ||| || |||||||| ||||| || ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
5325589 |
aacactgatcttgagaaagaaggaacttttcctgctgaagttgaagcatttcgtcataagattcttgaagctgatagtgttctctttgcttctcctgagt |
5325490 |
T |
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| Q |
104 |
ataactactctgtcacaggta |
124 |
Q |
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|||| || |||||| |||||| |
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| T |
5325489 |
ataattattctgtctcaggta |
5325469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 5351570 - 5351651
Alignment:
| Q |
43 |
gttgaagcttttcgccacaagattcttcaagctgatagtgttctttttgcttctcctgagtataactactctgtcacaggta |
124 |
Q |
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|||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||| || |||||| |||||| |
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| T |
5351570 |
gttgaagcttttcgtcaaaagattcttgctgctgatagtgttctctttgcttctcctgaatataattattctgtctcaggta |
5351651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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