View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18981_low_15 (Length: 236)
Name: NF18981_low_15
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32306548 - 32306769
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306548 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
32306647 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32306648 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaaactcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttcctat |
32306747 |
T |
|
| Q |
201 |
gtaagtttctcatacacatttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32306748 |
gtaagtttctcatacacatttt |
32306769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32310678 - 32310898
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32310678 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaacctcgatgttttgactggaa |
32310777 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32310778 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttcctat |
32310877 |
T |
|
| Q |
201 |
gtaagtttctcatacacattt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32310878 |
gtaagtttctcatacacattt |
32310898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32792977 - 32792757
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792977 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
32792878 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
32792877 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttatcaaatttgttctcttcctat |
32792778 |
T |
|
| Q |
201 |
gtaagtttctcatacacattt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32792777 |
gtaagtttctcatacacattt |
32792757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 32799638 - 32799424
Alignment:
| Q |
8 |
tttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799638 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
32799539 |
T |
|
| Q |
108 |
tcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgatgtaagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32799538 |
tcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttcctatgtaagtt |
32799439 |
T |
|
| Q |
208 |
tctcatacacatttt |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32799438 |
tctcatacacatttt |
32799424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32786594 - 32786373
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786594 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
32786495 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
32786494 |
atcaaggtcaggttcgtctgaattgctcccatcttgtaagctcttaagtgagtcggttcatatatttcattctggtttagcaaatttgttctcttcctat |
32786395 |
T |
|
| Q |
201 |
gtaagtttctcatacacatttt |
222 |
Q |
| |
|
|||||||||||| ||| ||||| |
|
|
| T |
32786394 |
gtaagtttctcacacatatttt |
32786373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32564142 - 32563923
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32564142 |
agattggtttctgcttatgcttcagatgacggatctacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgacttgaa |
32564043 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||| || |
|
|
| T |
32564042 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctggtttagaaaatttgtt-ttttccaat |
32563944 |
T |
|
| Q |
201 |
gtaagtttctcatacacattt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32563943 |
gtaagtttctcatacacattt |
32563923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 28214156 - 28213938
Alignment:
| Q |
3 |
attggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214156 |
attggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatgaaattgtctaaccttgatgttttgactggaaat |
28214057 |
T |
|
| Q |
103 |
caaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
28214056 |
caaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttcattctggtttagcaaatttgttctcttcttatgt |
28213957 |
T |
|
| Q |
203 |
aagtttctcatacacattt |
221 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
28213956 |
aagtttctcacacacattt |
28213938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32813805 - 32813598
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813805 |
agattggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
32813706 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| || |
|
|
| T |
32813705 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatataattcattctggtttagaaaatttgttctcttcctat |
32813606 |
T |
|
| Q |
201 |
gtaagttt |
208 |
Q |
| |
|
| |||||| |
|
|
| T |
32813605 |
gcaagttt |
32813598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 28222128 - 28222346
Alignment:
| Q |
3 |
attggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaat |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222128 |
attggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaat |
28222227 |
T |
|
| Q |
103 |
caaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttccgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||| |||| |
|
|
| T |
28222228 |
caaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttcattctggcttagcaaattggttctcttcctatgt |
28222327 |
T |
|
| Q |
203 |
aagtttctcatacacattt |
221 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
28222328 |
aagtttcttacacacattt |
28222346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28158866 - 28159032
Alignment:
| Q |
1 |
agattggtttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaa |
100 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
28158866 |
agattgatttctgctaatgcttccgatgacggatcaacctttcggatggatttggcaagggtggtgttgaaattgtctaatattgatgttttgactggaa |
28158965 |
T |
|
| Q |
101 |
atcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatattt |
167 |
Q |
| |
|
|| |||||||||||||||||||||| ||| || |||| |||||| |||||||||| |||||||| |
|
|
| T |
28158966 |
ataaaggtcaggttcgtctgaattgttccgaaattataagttcttaactgagttggttgatatattt |
28159032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 28177536 - 28177707
Alignment:
| Q |
8 |
tttctgcttatgcttcagatgacggatcaacctttcggatggattttgcaagggttatgttg------aaattgtctaaccttgatgttttgactggaaa |
101 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
28177536 |
tttctgctaatgcttccgatgacggatcaacctttcggatggattttgcaagggtggtgttggagttcaaattgtctaatcttgatgttttgactggaaa |
28177635 |
T |
|
| Q |
102 |
tcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattct |
173 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||| |||||| |||||||||| |||||||| ||||| |
|
|
| T |
28177636 |
tcaaggtcaggttcgtctgaattgttcccaaattataagttcttaactgagttggttgatatatttaattct |
28177707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 28171757 - 28171876
Alignment:
| Q |
52 |
tttgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtga |
151 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| || |||| ||| || || |
|
|
| T |
28171757 |
tttgcaagggtggtgttgaaattgtctaatgttgatgttttgactggaaatcaaggtcaggttcatctgaattgttcccaaattataagttctgaactgc |
28171856 |
T |
|
| Q |
152 |
gttggttcatatatttcatt |
171 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
28171857 |
gttggttgatatatttcatt |
28171876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 28161723 - 28161798
Alignment:
| Q |
55 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctccc |
130 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28161723 |
gcaaggattgtgttgaaattgtctaatattgatgttttgactggaaatcaaggtcaggtttgtctgaattgttccc |
28161798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 28147825 - 28147881
Alignment:
| Q |
67 |
ttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaat |
123 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||| |||||||||| || |||||||| |
|
|
| T |
28147825 |
ttgaaattgtctaattttgatgtattgacttgaagtcaaggtcagattggtctgaat |
28147881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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