View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_16 (Length: 229)
Name: NF18981_low_16
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 6188383 - 6188311
Alignment:
| Q |
13 |
aatattctttgtcctacctacagtagtaaagcaaagtcaaatatgtgcaacatttataaggatttgatttccg |
85 |
Q |
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| T |
6188383 |
aatattctttgtcctacctacagtagtaaagcaaagtcaaatatgtgcaacatttataaggatttgatttccg |
6188311 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 6188247 - 6188181
Alignment:
| Q |
147 |
tagtggtagttaatcgatataattgtctcttatccttttaaagtcactctcagtttagagattaatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6188247 |
tagtggtagttaatcgatataattgtctcttatccttttaaagtcactctcagtttagagattaatc |
6188181 |
T |
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