View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18981_low_17 (Length: 228)

Name: NF18981_low_17
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18981_low_17
NF18981_low_17
[»] chr4 (15 HSPs)
chr4 (38-212)||(45644607-45644782)
chr4 (1-39)||(50678777-50678815)
chr4 (1-37)||(50679442-50679478)
chr4 (1-39)||(56505691-56505729)
chr4 (1-39)||(56506592-56506630)
chr4 (1-38)||(36095816-36095853)
chr4 (1-34)||(36096493-36096526)
chr4 (1-38)||(43051270-43051307)
chr4 (1-40)||(45830214-45830253)
chr4 (5-38)||(18077224-18077257)
chr4 (1-41)||(292778-292818)
chr4 (1-41)||(11241679-11241718)
chr4 (6-38)||(13198929-13198961)
chr4 (1-41)||(28196342-28196382)
chr4 (1-33)||(49178834-49178866)
[»] chr5 (13 HSPs)
chr5 (44-127)||(34665086-34665169)
chr5 (70-127)||(34645415-34645472)
chr5 (1-37)||(18817629-18817665)
chr5 (1-40)||(18816949-18816988)
chr5 (1-39)||(25115755-25115793)
chr5 (1-39)||(25174847-25174885)
chr5 (1-38)||(11350807-11350844)
chr5 (1-39)||(11351445-11351483)
chr5 (6-40)||(25116084-25116118)
chr5 (6-40)||(25175174-25175208)
chr5 (1-41)||(12498946-12498986)
chr5 (5-37)||(18433015-18433047)
chr5 (6-38)||(18433339-18433371)
[»] chr8 (16 HSPs)
chr8 (1-40)||(13026632-13026671)
chr8 (1-38)||(9823379-9823416)
chr8 (1-37)||(39724066-39724102)
chr8 (1-38)||(12281123-12281160)
chr8 (1-34)||(13027299-13027332)
chr8 (1-37)||(22851390-22851426)
chr8 (1-37)||(41662421-41662457)
chr8 (6-41)||(15155879-15155914)
chr8 (1-35)||(765736-765770)
chr8 (7-37)||(9822748-9822778)
chr8 (7-40)||(29197296-29197329)
chr8 (5-38)||(43246198-43246231)
chr8 (1-37)||(3307338-3307374)
chr8 (1-37)||(15156203-15156239)
chr8 (5-37)||(16929264-16929296)
chr8 (7-39)||(38701942-38701974)
[»] chr2 (16 HSPs)
chr2 (1-40)||(26841584-26841623)
chr2 (1-39)||(2639500-2639538)
chr2 (1-38)||(18296711-18296748)
chr2 (1-39)||(30190921-30190959)
chr2 (1-38)||(2638819-2638856)
chr2 (1-38)||(6171474-6171511)
chr2 (1-38)||(20347482-20347519)
chr2 (5-37)||(26737803-26737835)
chr2 (1-37)||(26842256-26842292)
chr2 (1-36)||(18296077-18296112)
chr2 (1-40)||(41790930-41790969)
chr2 (1-34)||(7591204-7591237)
chr2 (5-38)||(11883622-11883655)
chr2 (5-38)||(24832330-24832363)
chr2 (5-37)||(11883948-11883980)
chr2 (14-50)||(28365499-28365535)
[»] chr6 (6 HSPs)
chr6 (1-39)||(33829654-33829692)
chr6 (1-37)||(33828990-33829026)
chr6 (5-39)||(3404011-3404045)
chr6 (6-39)||(21032303-21032336)
chr6 (5-37)||(3403717-3403749)
chr6 (6-38)||(18241853-18241885)
[»] chr1 (8 HSPs)
chr1 (1-39)||(48191373-48191411)
chr1 (1-38)||(49284408-49284445)
chr1 (1-37)||(48190771-48190807)
chr1 (1-38)||(8109011-8109048)
chr1 (1-38)||(47955305-47955342)
chr1 (1-37)||(6002237-6002273)
chr1 (6-39)||(31848215-31848248)
chr1 (7-39)||(47955632-47955664)
[»] chr7 (11 HSPs)
chr7 (1-38)||(13863974-13864011)
chr7 (1-38)||(44600153-44600190)
chr7 (1-37)||(44599489-44599525)
chr7 (1-40)||(9412343-9412382)
chr7 (1-40)||(13863310-13863349)
chr7 (1-37)||(3687674-3687710)
chr7 (1-40)||(8643784-8643823)
chr7 (5-41)||(13772637-13772673)
chr7 (7-39)||(37858335-37858367)
chr7 (7-39)||(45863021-45863053)
chr7 (8-43)||(46622836-46622872)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-43)||(45825-45866)
[»] chr3 (3 HSPs)
chr3 (5-39)||(45060893-45060927)
chr3 (1-37)||(20969037-20969073)
chr3 (1-37)||(1927772-1927808)
[»] scaffold0328 (2 HSPs)
scaffold0328 (1-37)||(6813-6849)
scaffold0328 (5-37)||(6152-6184)
[»] scaffold0535 (1 HSPs)
scaffold0535 (1-38)||(10011-10048)
[»] scaffold0319 (1 HSPs)
scaffold0319 (5-38)||(6393-6426)
[»] scaffold0192 (1 HSPs)
scaffold0192 (5-38)||(25391-25424)
[»] scaffold0802 (1 HSPs)
scaffold0802 (1-37)||(1438-1474)
[»] scaffold0001 (1 HSPs)
scaffold0001 (5-37)||(438930-438962)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 45644607 - 45644782
Alignment:
Q  38 taataagttttaccattttctttttattcattatgaatgatgaatgaataatcacaaattttgaggccacattcttatgtaagagtctataaaaaggcac 137  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45644607 taataagttttaccattttctttttatccattatgaatgatgaatgaataatcacaaattttcaggccacattcttatgtaagagtctataaaaaggcac 45644706  T
Q  138 taaagaacgtacaagttgtaacaaaatttcacttgaaagcgaaacgtctccgta-ttctttctgatagcaacaatg 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  45644707 taaagaatgtacaagttgtaacaaaatttcacttgaaagcgaaacctctccgtatttctttctgatagcaacaatg 45644782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50678815 - 50678777
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50678815 attggcaaaagataggggtgaaaagtgcaattaagccta 50678777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50679442 - 50679478
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  50679442 attggcaaaagataggggtgaaaagtgcaattaagcc 50679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 56505729 - 56505691
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  56505729 attggcaaaagataggggggaaaagtgcaattaagccta 56505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 56506592 - 56506630
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  56506592 attggcaaaagataagggtgaaaagtgcaattaagccta 56506630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36095853 - 36095816
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  36095853 attggcaaaagataggggtgaaaaatgcaattaagcct 36095816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36096493 - 36096526
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36096493 attggcaaaagataggggtgaaaagtgcaattaa 36096526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43051270 - 43051307
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43051270 attggcaaaagataggggtgaaaaatgcaattaagcct 43051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45830214 - 45830253
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  45830214 attgacaaaagataggggtgaaaagtgcgattaagcctaa 45830253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 18077224 - 18077257
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||| |||||||||||||||||||||||||||    
T  18077224 gcaaaaaataggggtgaaaagtgcaattaagcct 18077257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 292818 - 292778
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  292818 attggcaaactataggggggaaaagtgcaattaagcctaat 292778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11241679 - 11241718
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  11241679 attggcaaaagatagggg-gaaaagtacaattaagcctaat 11241718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 13198929 - 13198961
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||| |||||||||||||||||||    
T  13198929 caaaagataggggggaaaagtgcaattaagcct 13198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28196382 - 28196342
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  28196382 attggcaaattataggggggaaaagtgcaattaagcctaat 28196342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49178834 - 49178866
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaatta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  49178834 attggcaaaagataggggagaaaagtgcaatta 49178866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 34665086 - 34665169
Alignment:
Q  44 gttttaccattttctttttattcattatgaatgatgaatgaataatcacaaattttgaggccacattcttatgtaagagtctat 127  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  34665086 gttttaccgttttctttttatcctttatgaatgatgaatgaataatcacaaattttgaggctctattcttatgtaagagtctat 34665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 34645415 - 34645472
Alignment:
Q  70 atgaatgatgaatgaataatcacaaattttgaggccacattcttatgtaagagtctat 127  Q
    ||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  34645415 atgaatgatgaatgaatgatcacaaattttgaggctttattcttatgtaagagtctat 34645472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18817629 - 18817665
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  18817629 attggcaaaagataggggtgaaaagtgcaattaagcc 18817665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18816988 - 18816949
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  18816988 attggcaaaagataggggtgaaaaatgcaattaagcctaa 18816949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25115793 - 25115755
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25115793 attggcaaaagataggggggaaaagtgcaattaagccta 25115755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25174885 - 25174847
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25174885 attggcaaaagataggggggaaaagtgcaattaagccta 25174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11350844 - 11350807
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  11350844 attggcaaaagataggggtgaaaaatgcaattaagcct 11350807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11351445 - 11351483
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  11351445 attggcaaaagataggagtgaaaagtgcaattaaaccta 11351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 25116084 - 25116118
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  25116084 caaaagataggggggaaaagtgcaattaagcctaa 25116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 25175174 - 25175208
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  25175174 caaaagataggggggaaaagtgcaattaagcctaa 25175208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12498946 - 12498986
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  12498946 attggcaaactataggggggaaaagtgcaattaagcctaat 12498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 18433047 - 18433015
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||| ||||||||||||||||||    
T  18433047 gcaaaagataggggggaaaagtgcaattaagcc 18433015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 18433339 - 18433371
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||| |||||||||||||||||||    
T  18433339 caaaagataggggggaaaagtgcaattaagcct 18433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13026671 - 13026632
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13026671 attggcaaaagataggggtgaaaagtgcaattaagcctaa 13026632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9823379 - 9823416
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9823379 attggcaaaagataggggtgaaaagtgcaattaagcct 9823416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39724066 - 39724102
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39724066 attggcaaaagataggggtgaaaagtgcaattaagcc 39724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12281160 - 12281123
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12281160 attggcaaaagataggggggaaaagtgcaattaagcct 12281123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13027299 - 13027332
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13027299 attggcaaaagataggggtgaaaagtgcaattaa 13027332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22851426 - 22851390
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  22851426 attgacaaaagataggggtgaaaagtgcaattaagcc 22851390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41662421 - 41662457
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  41662421 attggcaaaagataggggggaaaagtgcaattaagcc 41662457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 15155914 - 15155879
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15155914 caaaagataggggggaaaagtgcaattaagcctaat 15155879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 765770 - 765736
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaag 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  765770 attggcaaaagataggggggaaaagtgcaattaag 765736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 9822778 - 9822748
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||    
T  9822778 aaaagataggggtgaaaagtgcaattaagcc 9822748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 29197329 - 29197296
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||||||||||| ||||||||||||||||||||    
T  29197329 aaaagataggggtcaaaagtgcaattaagcctaa 29197296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 43246198 - 43246231
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||| |||||||||||||||||||    
T  43246198 gcaaaagataggggggaaaagtgcaattaagcct 43246231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3307374 - 3307338
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  3307374 attgacaaaagataggggtgaaaaatgcaattaagcc 3307338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15156203 - 15156239
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  15156203 attgacaaaagataggggggaaaagtgcaattaagcc 15156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 16929264 - 16929296
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||| ||||||||||||||||||    
T  16929264 gcaaaagataggggagaaaagtgcaattaagcc 16929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 38701942 - 38701974
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagccta 39  Q
    ||||||||||||| |||||||||||||||||||    
T  38701942 aaaagataggggtcaaaagtgcaattaagccta 38701974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26841623 - 26841584
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26841623 attggcaaaagataggggtgaaaagtgcaattaagcctaa 26841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2639500 - 2639538
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2639500 attggcaaaagataggggtgaaaagtgcaattaagccta 2639538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18296711 - 18296748
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18296711 attggcaaaagataggggtgaaaagtgcaattaagcct 18296748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30190959 - 30190921
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  30190959 attggcaaaagataggggggaaaagtgcaattaagccta 30190921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2638856 - 2638819
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2638856 attggcaaaagataggggtgaaaaatgcaattaagcct 2638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6171474 - 6171511
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6171474 attggcaaaagataggggggaaaagtgcaattaagcct 6171511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20347482 - 20347519
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20347482 attggcaaaagataggggggaaaagtgcaattaagcct 20347519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 26737803 - 26737835
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||    
T  26737803 gcaaaagataggggtgaaaagtgcaattaagcc 26737835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26842256 - 26842292
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26842256 attggcaaaagataggggtgaaaagtgcacttaagcc 26842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18296112 - 18296077
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagc 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  18296112 attggcaaaagataggggtgaaaagtacaattaagc 18296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41790930 - 41790969
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  41790930 attggcaaaatataggggggaaaagtgcaattaagcctaa 41790969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7591237 - 7591204
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaa 34  Q
    |||||||||||||||||||||||||| |||||||    
T  7591237 attggcaaaagataggggtgaaaagtacaattaa 7591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11883655 - 11883622
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||| |||||||||||||||||||    
T  11883655 gcaaaagataggggggaaaagtgcaattaagcct 11883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 24832363 - 24832330
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||| |||||||||||||||||||    
T  24832363 gcaaaagataggggggaaaagtgcaattaagcct 24832330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 11883948 - 11883980
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||| ||||||||||||||||||    
T  11883948 gcaaaagataggggggaaaagtgcaattaagcc 11883980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 28365535 - 28365499
Alignment:
Q  14 aggggtgaaaagtgcaattaagcctaataagttttac 50  Q
    |||||||||||||||| || |||||||||||||||||    
T  28365535 aggggtgaaaagtgcattttagcctaataagttttac 28365499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33829654 - 33829692
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33829654 attggcaaaagataggggtgaaaagtgcaattaagccta 33829692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33829026 - 33828990
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33829026 attggcaaaagataggggtgaaaagtgcaattaagcc 33828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 3404011 - 3404045
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||| ||||||||||||||||||||    
T  3404011 gcaaaagataggggggaaaagtgcaattaagccta 3404045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 21032303 - 21032336
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagccta 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  21032303 caaaagataggggggaaaagtgcaattaagccta 21032336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 3403749 - 3403717
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||| ||||||||||||||||||    
T  3403749 gcaaaagataggggggaaaagtgcaattaagcc 3403717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 18241885 - 18241853
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||| |||||||||||||||||||    
T  18241885 caaaagataggggggaaaagtgcaattaagcct 18241853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48191373 - 48191411
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48191373 attggcaaaagataggggtgaaaagtgcaattaagccta 48191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49284445 - 49284408
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49284445 attggcaaaagataggggtgaaaagtgcaattaagcct 49284408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48190807 - 48190771
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  48190807 attggcaaaagataggggtgaaaagtgcaattaagcc 48190771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8109011 - 8109048
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8109011 attggcaaaagataggggggaaaagtgcaattaagcct 8109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47955342 - 47955305
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  47955342 attggcaaaagataggggggaaaagtgcaattaagcct 47955305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6002273 - 6002237
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6002273 attgacaaaagataggggtgaaaagtgcaattaagcc 6002237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 31848215 - 31848248
Alignment:
Q  6 caaaagataggggtgaaaagtgcaattaagccta 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  31848215 caaaagataggggagaaaagtgcaattaagccta 31848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 47955632 - 47955664
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||| ||||||||||||||||||||    
T  47955632 aaaagataggggggaaaagtgcaattaagccta 47955664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13863974 - 13864011
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13863974 attggcaaaagataggggtgaaaagtgcaattaagcct 13864011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44600153 - 44600190
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44600153 attggcaaaagataggggtgaaaagtgcaattaagcct 44600190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44599525 - 44599489
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  44599525 attggcaaaagataggggtgaaaagtgcaattaagcc 44599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9412343 - 9412382
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9412343 attggcaaaagataggggggaaaagtgcaattaagcctaa 9412382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13863349 - 13863310
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13863349 attggcaaaagataggggtgaaaaatgcaattaagcctaa 13863310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3687674 - 3687710
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3687674 attggcaaaagataggggggaaaagtgcaattaagcc 3687710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8643784 - 8643823
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaa 40  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  8643784 attggtaaaagatagggatgaaaagtgcaattaagcctaa 8643823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 13772673 - 13772637
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcctaat 41  Q
    |||||||||||||  ||||||||||||||||||||||    
T  13772673 gcaaaagatagggaggaaaagtgcaattaagcctaat 13772637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 37858335 - 37858367
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagccta 39  Q
    ||||||||||||| |||||||||||||||||||    
T  37858335 aaaagataggggtcaaaagtgcaattaagccta 37858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 45863053 - 45863021
Alignment:
Q  7 aaaagataggggtgaaaagtgcaattaagccta 39  Q
    ||||||||||||| |||||||||||||||||||    
T  45863053 aaaagataggggtcaaaagtgcaattaagccta 45863021  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 46622836 - 46622872
Alignment:
Q  8 aaagataggggt-gaaaagtgcaattaagcctaataa 43  Q
    |||||||||||| ||||||||||||||||||||||||    
T  46622836 aaagataggggttgaaaagtgcaattaagcctaataa 46622872  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45825 - 45866
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcctaataa 43  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  45825 attggcaaaagatagggg-gaaaagtgcaattaagcctaataa 45866  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 45060893 - 45060927
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagccta 39  Q
    |||||||||||||||||||||||||||||||||||    
T  45060893 gcaaaagataggggtgaaaagtgcaattaagccta 45060927  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20969037 - 20969073
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  20969037 attggcaaaagataggggggaaaagtgcaattaagcc 20969073  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1927808 - 1927772
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||| |||| |||||||||||||    
T  1927808 attggcaaaagataggggggaaaggtgcaattaagcc 1927772  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6813 - 6849
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6813 attggcaaaagataggggtgaaaaatgcaattaagcc 6849  T

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Target: scaffold0328; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 6184 - 6152
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    ||||||||||| |||||||||||||||||||||    
T  6184 gcaaaagatagaggtgaaaagtgcaattaagcc 6152  T

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Target: scaffold0535 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10048 - 10011
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  10048 attggcaaaagatagggggcaaaagtgcaattaagcct 10011  T

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Target: scaffold0319 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 6426 - 6393
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||| |||||||||||||||||||    
T  6426 gcaaaagataggggggaaaagtgcaattaagcct 6393  T

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Target: scaffold0192 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 25391 - 25424
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcct 38  Q
    |||||||||||||| |||||||||||||||||||    
T  25391 gcaaaagataggggggaaaagtgcaattaagcct 25424  T

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Target: scaffold0802 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1438 - 1474
Alignment:
Q  1 attggcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1438 attggcaaaagatagggggaaaaagtgcaattaagcc 1474  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 438962 - 438930
Alignment:
Q  5 gcaaaagataggggtgaaaagtgcaattaagcc 37  Q
    |||||||||||||| ||||||||||||||||||    
T  438962 gcaaaagataggggggaaaagtgcaattaagcc 438930  T

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