View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18981_low_3 (Length: 492)

Name: NF18981_low_3
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18981_low_3
NF18981_low_3
[»] chr4 (5 HSPs)
chr4 (20-472)||(40332696-40333137)
chr4 (20-124)||(40312133-40312235)
chr4 (20-124)||(40322209-40322311)
chr4 (157-287)||(40312873-40312998)
chr4 (157-287)||(40322949-40323074)
[»] chr7 (2 HSPs)
chr7 (411-472)||(13066730-13066791)
chr7 (354-416)||(13066824-13066886)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 40332696 - 40333137
Alignment:
Q  20 ccatgtactgtggacagctgagggaggttgattgatcacgaacggggttgaattagtaactacatccaacagtgggacctactaattggtccaagtcaga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40332696 ccatgtactgtggacagctgagggaggttgattgatcacgaacggggttgaattagcaactacatccaacagtgggacctactaattggtccaagtcaga 40332795  T
Q  120 atcaagaaagtagtaacaaaaataactactattgattattgaataatttgatttgactcccagtaatgctaattaagtttcttactggaatttccatgta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40332796 atcaagaaagtagtaacaaaaataactactattgattattgaataatttgatttgactcccagtaatgctaattaagtttcttactggaattttcatgta 40332895  T
Q  220 tgtatttcagtgggagagtaaatcattagagacaactttaccatttggattaaaaaggttcatggaatgccatcatattcactttttaaacataatcata 319  Q
    ||||||||||||||||||||||| |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40332896 tgtatttcagtgggagagtaaatta-----------tttaccatttggattaaaaaggttcatggaatgccatcatattcactttttaaacataatcata 40332984  T
Q  320 ttatttcattgttaaaaaagtgtgaaatacaaagagagcgctgctatacagtacgataaagtcagcacacgagagccacacgaacatacaatttgtttag 419  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||     
T  40332985 ttatttcattgttaaaaaagtgtgaaatacaaagatagcactgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttgtttat 40333084  T
Q  420 agtatatattaaaaaacaatgttatcaaagcaataacatataaaaccgacgtt 472  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40333085 agtatatattaaaaaacaatgttatcaaagcaataacatatagaaccgacgtt 40333137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 40312133 - 40312235
Alignment:
Q  20 ccatgtactgtggacagctgagggaggttgattgatcacgaacggggttgaattagtaactacatccaacagtgggacctactaattggtccaagtcaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| |||| ||||||| ||||||||||| ||||    
T  40312133 ccatgtactgtggacagctgagggaggttgattgatcacgaac-gggttgaatcagcaactacatccaac-gtggaacctactcattggtccaagccaga 40312230  T
Q  120 atcaa 124  Q
    |||||    
T  40312231 atcaa 40312235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 40322209 - 40322311
Alignment:
Q  20 ccatgtactgtggacagctgagggaggttgattgatcacgaacggggttgaattagtaactacatccaacagtgggacctactaattggtccaagtcaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| |||| ||||||| ||||||||||| ||||    
T  40322209 ccatgtactgtggacagctgagggaggttgattgatcacgaac-gggttgaatcagcaactacatccaac-gtggaacctactcattggtccaagccaga 40322306  T
Q  120 atcaa 124  Q
    |||||    
T  40322307 atcaa 40322311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 40312873 - 40312998
Alignment:
Q  157 attgaataatttgatttgactcccagtaatgctaattaagtttcttactggaatttccatgtatgtatttcagtgggagagtaaatcattagagacaact 256  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||  ||||  |||| | ||||    |||||||||||||| |||||||| ||  ||||     
T  40312873 attgaataatttggtttgac-cccaataatgctaattaagtttccaactgtgattttcgtgta----tttcagtgggagagaaaatcattcgaatcaacc 40312967  T
Q  257 ttaccatttggattaaaaaggttcatggaat 287  Q
    ||||| |||||||||||||||||| ||||||    
T  40312968 ttaccgtttggattaaaaaggttcttggaat 40312998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 40322949 - 40323074
Alignment:
Q  157 attgaataatttgatttgactcccagtaatgctaattaagtttcttactggaatttccatgtatgtatttcagtgggagagtaaatcattagagacaact 256  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||  ||||  |||| | ||||    |||||||||||||| |||||||| ||  ||||     
T  40322949 attgaataatttggtttgac-cccaataatgctaattaagtttccaactgtgattttcgtgta----tttcagtgggagagaaaatcattcgaatcaacc 40323043  T
Q  257 ttaccatttggattaaaaaggttcatggaat 287  Q
    ||||| |||||||||||||||||| ||||||    
T  40323044 ttaccgtttggattaaaaaggttcttggaat 40323074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 13066791 - 13066730
Alignment:
Q  411 tttgtttagagtatatattaaaaaacaatgttatcaaagcaataacatataaaaccgacgtt 472  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13066791 tttgtttatagtatatattaaaaaacaatgttatcaaagcaataacatatagaaccgacgtt 13066730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 13066886 - 13066824
Alignment:
Q  354 agagcgctgctatacagtacgataaagtcagcacacgagagccacacgaacatacaatttgtt 416  Q
    ||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgtt 13066824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University