View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_5 (Length: 420)
Name: NF18981_low_5
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 10560188 - 10560597
Alignment:
| Q |
1 |
caatccagtcagaccttataggtttcatgattttaatttttaatacaaggacctaaagatatggaacaaagtgtttgagaaggcagagaagttggcaggc |
100 |
Q |
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| T |
10560188 |
caatccagtcagatcttataggtttcatgattttaatttttaatacaaggacctaaagatatggaacaaagtgtttgagaaggcagagaagttggcaggc |
10560287 |
T |
|
| Q |
101 |
actaaaagaggaagcatagcgccgctgttctgattgaaacacttcctgcagtgtttcaaatggatgaaattttgtatgagctcagggttataaatctgta |
200 |
Q |
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| T |
10560288 |
actaaaagaggaagcatagagccgctgttctgattgaaacacttcctgcagtgtttcaaatggatgaaattttgtatgagctcagggttataaatctgta |
10560387 |
T |
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| Q |
201 |
ggtctgaaccgcaggcgttaggatttcatttcaattatgttaagactttctcggctcacacatattggttgttaccttattaaaattgccatatttcact |
300 |
Q |
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| T |
10560388 |
ggtctgaaccgcaggcgttaggatttcatttcaattatgttaagactttctcggctcacacatattggttgttaccttattaatgttgccatatttcact |
10560487 |
T |
|
| Q |
301 |
ctgtggaacagtcaaagctttgaattatgatttggtttatacttcattgtatttgtggttgatgatagtttattgttttaaattatgtcctgtgttacct |
400 |
Q |
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| T |
10560488 |
ctgtggaacagtcaaagctttgaattatgatttggtttatacttcattatatttgtggttgatgatagtttattgttttaaattatgtcctgtgttacct |
10560587 |
T |
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| Q |
401 |
aagttctctg |
410 |
Q |
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| T |
10560588 |
aagttctctg |
10560597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 10558142 - 10558273
Alignment:
| Q |
55 |
aaagatatggaacaaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gcgccgctgttctgattgaaacacttcctgcagtg |
153 |
Q |
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| T |
10558142 |
aaagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtg |
10558241 |
T |
|
| Q |
154 |
tttcaaatggatgaaattttgtatgagctcag |
185 |
Q |
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| T |
10558242 |
tttcaaatggatgaaattctgtatgagctcag |
10558273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 10559509 - 10559613
Alignment:
| Q |
295 |
ttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttcattgtatttgtggttgatgatagtttattgttttaaattatgtcctgtg |
394 |
Q |
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| T |
10559509 |
ttcaccctgtggaactgtcaaagctttgaattttgatttggttcatacttcattgt------ggttgatgatagtttattgttctaaattatgtcctgtg |
10559602 |
T |
|
| Q |
395 |
ttacctaagtt |
405 |
Q |
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| T |
10559603 |
ttacctaagtt |
10559613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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