View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18981_low_7 (Length: 387)
Name: NF18981_low_7
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 11105086 - 11105454
Alignment:
| Q |
4 |
tcatacccgacaagaaagtcggttcaactttcattgccagcagaaggacctctttaataagtgatctgtaagcacatctatttatgctcgatgaacaaca |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11105086 |
tcatacctgacaagaaagtcggttcaactttcattgccagcagaaggacctctttaatgagtgatctgtaagcacatctatttatgctcgatgaacaaca |
11105185 |
T |
|
| Q |
104 |
aaagtgatctataagcacctctattaacgcttgataaattttgatgtttgtagtcaccttgattagcctaaagcccaattcacataaattttttccttat |
203 |
Q |
| |
|
||| | ||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11105186 |
aaaataatctataagcacctctactaacgctcgatgaattttgatgtttgtcgtcaccttgattagcctaaagcccaattcacataaattttttccttat |
11105285 |
T |
|
| Q |
204 |
tnnnnnnnnnnntgtatacaagtctcatgaataccttttcaagttatctttgtctttagtattgtatctagctcacagggctatgactttaatttattgc |
303 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11105286 |
taaaaaaaaaaatgtatacaagtctcatgaataccttttcaagttatctttgtctttagtattgtatttagctcacagggctatgcctttaatttattgc |
11105385 |
T |
|
| Q |
304 |
agatgttggtatggaccaaagatggagtatcaaatttggctggagagatatctttgcttgctggtttgt |
372 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11105386 |
agatgttgatatggaccaaagatggagtatcaaatttggctggagagatatctttgcttgctggtttgt |
11105454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 57 - 372
Target Start/End: Original strand, 11591610 - 11591930
Alignment:
| Q |
57 |
ttaataagtgatctgtaagcacatctatttatgctcgatgaacaacaaaagtgatctataagcacctctattaacgcttgataaattttgatgtttgtag |
156 |
Q |
| |
|
||||| |||||||| ||||||||| |||||| | ||| ||||||||| ||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
11591610 |
ttaatgagtgatctataagcacatttatttacgttcgttgaacaacagaagcgatctataagcacctctattaacgctctatgaattttgatgtttgtat |
11591709 |
T |
|
| Q |
157 |
tcaccttgattagcctaaagcccaattcacataaattttttccttattnnnnnnnnnnn----tgtatacaagtctca-tgaataccttttcaagttatc |
251 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
11591710 |
tcactttagttagcctaaagcccaattcacataaattttttccttattaaaaaaaaaagaaaatgtatacaagtctcaatgaatttcttttcaaattatt |
11591809 |
T |
|
| Q |
252 |
tttgtctttagtattgtatctagctcacagggctatgactttaatttattgcagatgttggtatggaccaaagatggagtatcaaatttggctggagaga |
351 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11591810 |
tttgtctttagtattgtatttagctcatggggctatggctttaactcattgcagatgttgatatggaccaaagatggagtatcaaatttggctggagaga |
11591909 |
T |
|
| Q |
352 |
tatctttgcttgctggtttgt |
372 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11591910 |
tatctttgcttgctggtttgt |
11591930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 11118578 - 11118628
Alignment:
| Q |
320 |
caaagatggagtatcaaatttggctggagagatatctttgcttgctggttt |
370 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11118578 |
caaagttggagtatcaaatgtggctggagagatatctttgcttgctggttt |
11118628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University