View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_8 (Length: 380)
Name: NF18981_low_8
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 51122627 - 51122257
Alignment:
| Q |
10 |
atcaacaaaggcagtagagttggtcaaaggtgccataatgcagtagagtattatttaatatcaatgcaatgagtaagtagtactaagaattatgttttag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
51122627 |
atcaacaaaggcagtagagttggtcaaaggtgccataatgcagtagagtattatttaatatcaatgcaatgagtaagtagtactaagaattgcgttttgg |
51122528 |
T |
|
| Q |
110 |
tatctcaattcactgattcaaaatgacagtaaaatcatgtggtgtttcaagatataatgcagatgtacaaacaaatgaaaatatatgttgaacaaagctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51122527 |
tatctcaattcactgattcaaaatgacagtaaaatcatgtggtgtttcaagatataatgcagatgtacaaacaagtgaaaatatatgttgaacaaagctt |
51122428 |
T |
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| Q |
210 |
gcagtcaccttttgtttaaattgaattgccattttctgcaagcttgagacaaaaaattcaaagaaaattaaggatgaggacacaaatgtgattacaaacc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51122427 |
gcagtcaccttttgtttaaattgaattgccattttctgcaagcctgagacaaaaaattcaaagaaaaataaggatgaggacacaaatgtgattacaaacc |
51122328 |
T |
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| Q |
310 |
tcaatataaatgtgttcataaacttaaatatataccatgtcacaaacaaatcctataatttatacaagagt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
51122327 |
tcaatataaatgtgttcataaacttaaatatataccatgtcacaaacaaatcttataatttatacaggagt |
51122257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 34947331 - 34947568
Alignment:
| Q |
13 |
aacaaaggcagtagagttggt---caaaggtgccataatgcagtagagtattatttaatatcaatgcaatgagtaagtagtactaagaattatgttttag |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |
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| T |
34947331 |
aacaaaggcagtagagttggtggtcaaaggtgccataatgcaatagagtattatttaatatcaatgcaattagtaagtagtactaagaattacgttttgg |
34947430 |
T |
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| Q |
110 |
tatctcaattcactgattcaaaatgacagtaaaatcatgtggtgtttcaagatataatgcagatgtacaaacaaatgaaaatatatgttgaacaaagctt |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
34947431 |
tatctcagttcactgattcaaaatgacagtaaaatcatgtggtgtttcaaaatataatgcagatgtacaaacaagtgaaattatatgttgaacaaagcct |
34947530 |
T |
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| Q |
210 |
gcagtcaccttttgtttaaattgaattgccattttctg |
247 |
Q |
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| T |
34947531 |
gcagtcaccttttgtttaaattgaattgccattttctg |
34947568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 30369498 - 30369327
Alignment:
| Q |
209 |
tgcagtcaccttttgtttaaattgaattgccattttctgcaagcttgagacaaaaaattcaaagaaaattaaggatgaggacacaaatgtgattacaaac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
30369498 |
tgcagtcaccttttgtttaaattgaattgccattttctgcaagtctgagacaaaaaattcaaagaaaactaaggatgaggacacaaatgtgattaaaaac |
30369399 |
T |
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| Q |
309 |
ctcaatataaatgtgttcataaacttaaatatataccatgtcacaaacaaatcctataatttatacaagagt |
380 |
Q |
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| T |
30369398 |
ctcaatataaatgtgttcataaacttaaatatataccatgtcacaagcaaatcctataatttatacaggagt |
30369327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 30072804 - 30072760
Alignment:
| Q |
336 |
aatatataccatgtcacaaacaaatcctataatttatacaagagt |
380 |
Q |
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| T |
30072804 |
aatatataccatgtcacaagcaaatcctataatttatacaagagt |
30072760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 30013092 - 30013056
Alignment:
| Q |
344 |
ccatgtcacaaacaaatcctataatttatacaagagt |
380 |
Q |
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| T |
30013092 |
ccatgtcacaagcaaatcctataatttatacaggagt |
30013056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 21530134 - 21529911
Alignment:
| Q |
25 |
agagttggtc-aaaggtgccataatgcagtagagtattatttaatatcaatgcaatgagtaagtagtactaagaattatgttttagtatctcaattcact |
123 |
Q |
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| T |
21530134 |
agagttggtctaaagataccataatgcagtagagtattatttaatatcaatgtaatgagtaagcagtactaagaattacgttttggtatctcagttcact |
21530035 |
T |
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| Q |
124 |
gattcaaaatgacagtaaaatcatgtggtgtttcaagatataatgcagatgtacaaacaaatgaaaatatatgttgaacaaagcttgcagtcaccttttg |
223 |
Q |
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| T |
21530034 |
gtttcaaaatgacagtaaagtcatgtggtgtttcaagatataatgcagatgcacaaacaagtgaaattctatgttgaacaaagcttgcagtcaccttttg |
21529935 |
T |
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| Q |
224 |
tttaaattgaattgccattttctg |
247 |
Q |
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|||||||| ||||| ||||||||| |
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| T |
21529934 |
tttaaattaaattgtcattttctg |
21529911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 38827620 - 38827449
Alignment:
| Q |
209 |
tgcagtcaccttttgtttaaattgaattgccattttctgcaagcttgagacaaaaaattcaaagaaaattaaggatgaggacacaaatgtgattacaaac |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38827620 |
tgcagtaaccttttgtttaaattgaattgccattttctgcaagcctgagacaaaaaattcaaagaaaactaaggatgaggacacaaatgtgattacaaac |
38827521 |
T |
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| Q |
309 |
ctcaatataaatgtgttcataaacttaaatatataccatgtcacaaacaaatcctataatttatacaagagt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
38827520 |
ctcaatataaatgtgttcataaacttaaatatataccatgtcacaagcaaatcctataatttatacaggagt |
38827449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 39016296 - 39016415
Alignment:
| Q |
261 |
aaaaattcaaagaaaattaaggatgaggacacaaatgtgattacaaacctcaatataaatgtgttcataaacttaaatatataccatgtcacaaacaaat |
360 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||| |
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| T |
39016296 |
aaaaattcaatgaaaactaaggatgaggacacaaatgtgattacaaacctcaatataaatatgttaataaactataatatataccatgtcacaagcaaat |
39016395 |
T |
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| Q |
361 |
cctataatttatacaagagt |
380 |
Q |
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||||||||||||||| |||| |
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| T |
39016396 |
cctataatttatacaggagt |
39016415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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