View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18981_low_9 (Length: 368)
Name: NF18981_low_9
Description: NF18981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18981_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 72 - 354
Target Start/End: Original strand, 40333181 - 40333463
Alignment:
| Q |
72 |
caatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatt |
171 |
Q |
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|||||||||||||||||| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
40333181 |
caatgctaccaaaggaatggtgggtataacatgtacagaagttgatttggaccttgaatgaagtgttttctcataagaaatatacagaggaggcaaaatt |
40333280 |
T |
|
| Q |
172 |
tgtcatttgtatcaaatcaaaattagnnnnnnnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcat |
271 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
40333281 |
tgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaaacttgttgtgtaaatatgacgacaaattttgtcgtgtattttagcat |
40333380 |
T |
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| Q |
272 |
tttccatacatctccaaaaatgacgttcgaaagacatgctaccacaccacttcaacgccaacaagttcatcgcattgcctctc |
354 |
Q |
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| T |
40333381 |
tttgtatacatctccaaaaatgacgttcgaaagacatgctaccacaccacttcaacgccaacaagttcatcgcatcgcctctc |
40333463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 13066686 - 13066482
Alignment:
| Q |
72 |
caatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatt |
171 |
Q |
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|||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||| |
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| T |
13066686 |
caatgctaccaaagaaatggtgggtatgacacgtacagaagttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggaaaaatt |
13066587 |
T |
|
| Q |
172 |
tgtcatttgtatcaaatcaaaattagnnnnnnnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcat |
271 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
13066586 |
tgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaaacttgtcgtgtaaatctgtcgacaaattttgtcgtgtattttagcat |
13066487 |
T |
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| Q |
272 |
tttcc |
276 |
Q |
| |
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||||| |
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| T |
13066486 |
tttcc |
13066482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 76 - 279
Target Start/End: Complemental strand, 17074555 - 17074353
Alignment:
| Q |
76 |
gctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtc |
175 |
Q |
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|||||||||| ||| ||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
17074555 |
gctaccaaagcaatggtgggtatgac-cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggcataatttgtc |
17074457 |
T |
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| Q |
176 |
atttgtatcaaatcaaaattagnnnnnnnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttc |
275 |
Q |
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|||||| ||||||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||| |
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| T |
17074456 |
atttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaaacttgtcgtgtaaatttgacgacaatttttgtcgtgtattttaacattttc |
17074357 |
T |
|
| Q |
276 |
cata |
279 |
Q |
| |
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|||| |
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| T |
17074356 |
cata |
17074353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 76 - 279
Target Start/End: Original strand, 17573715 - 17573917
Alignment:
| Q |
76 |
gctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtc |
175 |
Q |
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|||||||||| ||| ||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
17573715 |
gctaccaaagcaatggtgggtatgac-cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggcataatttgtc |
17573813 |
T |
|
| Q |
176 |
atttgtatcaaatcaaaattagnnnnnnnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttc |
275 |
Q |
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|||||| ||||||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||| |
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| T |
17573814 |
atttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaaacttgtcgtgtaaatttgacgacaatttttgtcgtgtattttaacattttc |
17573913 |
T |
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| Q |
276 |
cata |
279 |
Q |
| |
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|||| |
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| T |
17573914 |
cata |
17573917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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