View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_11 (Length: 600)
Name: NF18982_high_11
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 584
Target Start/End: Original strand, 2580779 - 2581348
Alignment:
| Q |
15 |
ataattctacaacgaaagataaaataaagtcggactataatcatatataaaataaattattttcataaactatactagagagctaattatgataatggtt |
114 |
Q |
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| T |
2580779 |
ataattctacaacgaaagataaaataaagtcggactataatcatatataaaataaattgttttcataagctatactagagagctaattataataatggtt |
2580878 |
T |
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| Q |
115 |
aaaaacgacttattaacatgtcatcggagtcggaccaagcataaattgtatgacataacaaattgatgatttacattgtctggtgcacatcaatataact |
214 |
Q |
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| T |
2580879 |
aaaaacgacttattaacatatcatcggagttggatcaagcataagttgtatgacataacaaattgatgatttacattgcctcgtgcacatcaatataact |
2580978 |
T |
|
| Q |
215 |
cccattttaaatgatttatgtatgttttttcttaaagtgnnnnnnnnnnnncaaacgtaaggtannnnnnnattttaaataatttcgtggtgctcgtaag |
314 |
Q |
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| T |
2580979 |
cccattttaaatgatttatgtatgttttttcttaaagtaaaaaaataaaaacaaacgtaaagta--tttttattttaaataatttcgtggtgctcgtaag |
2581076 |
T |
|
| Q |
315 |
tttttatctttttcacatggacaaaacaacattgctcaattagttatattgttatttattcaatttcaatggaaaaagtgttatatataacataatatca |
414 |
Q |
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| T |
2581077 |
tttttatctttttcacatggacaaaacaacattgctcaattagttatattgttatttattcaatttcaatggaaaaagtgttatatataacataatatca |
2581176 |
T |
|
| Q |
415 |
tgatttgaaaataattatcaattttgaatagacgtttttctaaataaatttgttcttaataattttagaacac--nnnnnnngaaagaatttaaatttta |
512 |
Q |
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| T |
2581177 |
tgatttgaaaataattatcaattttgaatagacgtttttctaaataaatttgttcttaataattttagaacactttttttttgaaagaatttaaatttta |
2581276 |
T |
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| Q |
513 |
aaacatatgacatggatgttaaatctaaaatatagataagttcatatcatatagaaattatgaaattgaaac |
584 |
Q |
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| T |
2581277 |
aaacatatgacatggatgttaaatctaaaatatagataagttcatatcatatagaaattgtgaaattgaaac |
2581348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 30552713 - 30552681
Alignment:
| Q |
66 |
ataaattattttcataaactatactagagagct |
98 |
Q |
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| T |
30552713 |
ataaattattttcataaactatcctagagagct |
30552681 |
T |
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