View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_12 (Length: 594)
Name: NF18982_high_12
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 15 - 588
Target Start/End: Original strand, 29955655 - 29956228
Alignment:
| Q |
15 |
caaatacaacgaacccttgactgcatgattatcttgatcaaatgatataatgcttacagttctaaacttctactacaccatagaggcatagacataatgt |
114 |
Q |
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| T |
29955655 |
caaatacaacgaacccttgactgcatgattatcttgatcaaatgatataatgcttacagttctaaacttctactacaccatagaggcatagacataatgt |
29955754 |
T |
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| Q |
115 |
cttttccgctagtcacattatacacaagataaggcaagaaaacccagataggaaaagcaggactaacccaatgaatttgatagtattgccacgatcatcc |
214 |
Q |
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| T |
29955755 |
cttttccgctagtcacattatacacaagataaggcaagaaaacccagataggaaaagcaggactaacccaatgaatttgatagtattgccacgatcatcc |
29955854 |
T |
|
| Q |
215 |
ttgattggagtgacagtgagaagattccaaaacggagttccatttttcttgtagtttaaaagcctgccacaataacttttcccgttcttcgttgcatccc |
314 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29955855 |
ttaattggagtgacagtgagaagattccaaaacggagttccatttttcttgtagtttaaaagcctgccacaataacttttcccattcttcgttgcatccc |
29955954 |
T |
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| Q |
315 |
gaatttttgctacttcgttctggtcagtttcaggtccttgaagaaatcggctgcaacaagaaattggcttctttcattaaaaaataatcacattttctac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29955955 |
gaatttttgctacttcgttctggtcagtttcaggtccttgaagaaatcggctgcaacaagaaattggcttctttcattaaaaaataatcacattttctac |
29956054 |
T |
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| Q |
415 |
ctatatacctagaaatactcctggttcactgcaaatttgactgcatcagctgaatatttctgtaatttttcactaaatcaaggactcttacctaactaca |
514 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29956055 |
ctatatacctagaaattctcttggttcactgcaaatttgactgcatcagctgaacatttctgtaatttttcactaaatcaaggactcttacctaactaca |
29956154 |
T |
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| Q |
515 |
tccttgaccgcaatttaaatcactacataatttcctagctacttgtacctacaaagactcactctcctatgcta |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
29956155 |
tccttgaccgcaatttaaatcactacataatttcctagctatttatacctacaaagactcactctcctatgcta |
29956228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 40955142 - 40955044
Alignment:
| Q |
199 |
attgccacgatcatccttgattggagtgacagtgagaagattccaaaacggagttccatttttcttgtagtttaaaagcctgccacaataacttttccc |
297 |
Q |
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||||||| |||||||||||| || | | ||||||||||||||| || |||||||||| |||||||| || | | ||| ||||||||||||||||| |
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| T |
40955142 |
attgccatcatcatccttgatgggtgaaatagtgagaagattccagaagggagttccatccttcttgtaattcagtaaccttccacaataacttttccc |
40955044 |
T |
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