View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_14 (Length: 554)
Name: NF18982_high_14
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 28 - 544
Target Start/End: Original strand, 12120349 - 12120867
Alignment:
| Q |
28 |
tacttttaatacggtgaaaattgcatatggtgtcaatttatgtgttcaataatannnnnnnnnnncgacagaaatgtgttaaataattttcgacaatttc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12120349 |
tacttttaatacggtgaaaattgcatatggtgtcaatttatgtgttcaataatatatttttttt-cgacagaaatgtgttaaataattttcgacaatttc |
12120447 |
T |
|
| Q |
128 |
tagtcatgccnnnnnnnnn--tcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaacacccaatcgatt |
225 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12120448 |
tagtcatgccaaaaaaaaaaatcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaacacccaaacgatt |
12120547 |
T |
|
| Q |
226 |
accccattaaa-ttgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaatttagggacatcgc |
324 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120548 |
accccattaaaattgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaatttagggacatcgc |
12120647 |
T |
|
| Q |
325 |
tgggaattaggacttggtgttgaatatgttactgaacattttccatatgcatttttcttcaatctggactctaaaatgtggagactgtaatgttgatgga |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
12120648 |
tgggaattaggacttggtgttgaatatgttactgaacattttccatatacatttttcttcaatctggactctaaaatgtggtggctgtaatgttgatgga |
12120747 |
T |
|
| Q |
425 |
atttaggatattgaaatattggtgcttgttatcagtccctcatgcccattattttaaacttttataaataatgcttatcctctatgcatacacttcattt |
524 |
Q |
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| T |
12120748 |
atttaggatattgaaatattggtgcttgttatcagtccctcatgcccattattttaaacttttataaataatgcttatcctctatgcatacacttcattt |
12120847 |
T |
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| Q |
525 |
atgtctactgtgactctgtg |
544 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
12120848 |
atgtttactgtgactctgtg |
12120867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 16895236 - 16895281
Alignment:
| Q |
170 |
aagaggagtgctatgaacattctctttctcacattctctctaacac |
215 |
Q |
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| T |
16895236 |
aagagaagtgctatgaacactctttttctaacattctctctaacac |
16895281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 43077836 - 43077784
Alignment:
| Q |
464 |
tcatgcccattattttaaacttttataaataatgcttatcctctatgcataca |
516 |
Q |
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|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
43077836 |
tcatgctcattatttttaacttttgtaaataatgtttatcctctatgcataca |
43077784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 24886034 - 24886077
Alignment:
| Q |
172 |
gaggagtgctatgaacattctctttctcacattctctctaacac |
215 |
Q |
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||||||||||||| ||||||||||||| ||| |||||||||||| |
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| T |
24886034 |
gaggagtgctatggacattctctttctaacactctctctaacac |
24886077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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