View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_19 (Length: 524)
Name: NF18982_high_19
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 5476378 - 5475924
Alignment:
| Q |
1 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476378 |
ctcaaactttagaatatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
5476279 |
T |
|
| Q |
101 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476278 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaa |
5476179 |
T |
|
| Q |
201 |
ggaagaagagagaaataacaatatgtccaatgatgatttttgtgctttccatcgtcccaccccaccagaggatattagatggtttcaaatttgtgattat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| || |||||| |||||| | || |
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| T |
5476178 |
ggaagaagagagaaataacaatatgtccaatgatgatttttgtgcttgccat-----catcccaccagaggatatcagttggttttaaatttaccagaat |
5476084 |
T |
|
| Q |
301 |
gagcttttgacgaatgga--tatacatagaacaaaatggcaagta-gatttttggtttatttgtctctttgttatatttttctacagaacctatttgtct |
397 |
Q |
| |
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|||||||||| ||||||| | || ||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
5476083 |
gagcttttgatgaatggatgtttatatagaaccaaatggcagttatgctttttggtttatttgtctctttgttatatttttctacagaacatatctgtct |
5475984 |
T |
|
| Q |
398 |
ctttgtttctgtttccttgtttaatactgactaaaaaagtattgtgaaactatcagtgat |
457 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
5475983 |
ctttgtttctgtttctttgtttaatactgactaaaaaagtagtgtgaaactttcagtgat |
5475924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 5481447 - 5481101
Alignment:
| Q |
19 |
accagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatg |
118 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||| ||| ||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||| | |
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| T |
5481447 |
accagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggatcattgagatcttttttgacg |
5481348 |
T |
|
| Q |
119 |
ttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataa |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5481347 |
ttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggcttttaacttcacattgagttgatgcaaaaaggaagaagagaggaataa |
5481248 |
T |
|
| Q |
219 |
caatatgtccaatgatgatttttgtgctttccatcgtcccaccccaccagaggatattagatggtttcaaatttgtgattatgagcttttgacgaatgga |
318 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
5481247 |
caatatgtacactgatgatttttgtgcttgccat-----catcccaccagaggatatcagatggtttcaaattggtgattacgagcttttgatgaatgga |
5481153 |
T |
|
| Q |
319 |
tatacatagaacaaaatggcaagtagatttttggtttatttgtctctttgtt |
370 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
5481152 |
tatacatagaacaagatggcaagtagctttttggtttatttgtctctttgtt |
5481101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5484314 - 5484144
Alignment:
| Q |
1 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |
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| T |
5484314 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaagaaaggcaattggatggatct |
5484215 |
T |
|
| Q |
101 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484214 |
ttgagatctattttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
5484144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5489499 - 5489329
Alignment:
| Q |
1 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
5489499 |
ctcaaacttttgaacatgaccagtttggttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaaggatcc |
5489400 |
T |
|
| Q |
101 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
171 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5489399 |
ttgagatcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtactaacattaaggct |
5489329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 5495275 - 5495061
Alignment:
| Q |
7 |
ctttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgaga |
106 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |
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| T |
5495275 |
ctttaaaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatggatctttgaga |
5495176 |
T |
|
| Q |
107 |
tcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaaga |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || |||| |||||||||||||| |||| |
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| T |
5495175 |
tcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtgctaacattattgctactcactacatattgggttgatgcaaaaagaaaga |
5495076 |
T |
|
| Q |
207 |
agagagaaataacaa |
221 |
Q |
| |
|
|||| ||||| |||| |
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|
| T |
5495075 |
agagggaaatgacaa |
5495061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 5466684 - 5466460
Alignment:
| Q |
29 |
ttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtg |
128 |
Q |
| |
|
|||||||||| ||||| |||| | ||||||||| | ||| ||||| || |||||||||||||||||||| || ||||||||||| ||||||||||||| |
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|
| T |
5466684 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtg |
5466585 |
T |
|
| Q |
129 |
ccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtcc |
228 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| || ||| |
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| T |
5466584 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaagaggagagcaataacataatatcc |
5466485 |
T |
|
| Q |
229 |
aatgatgatttttgtgctttccatc |
253 |
Q |
| |
|
|| || |||| |||||||| ||||| |
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|
| T |
5466484 |
aaagacgattcttgtgcttgccatc |
5466460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 5475891 - 5475838
Alignment:
| Q |
455 |
gatgtgctgcatattctctgaagttcattgtctaaattaaatacatgaacttag |
508 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5475891 |
gatgtgctgcatctgctctgaagtttattgtctaaattaaatacatgaacttag |
5475838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 5481060 - 5481015
Alignment:
| Q |
414 |
ttgtttaatactgactaaaaaagtattgtgaaactatcagtgatgt |
459 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
5481060 |
ttgtttaatactgacttaaaaaatattgtgaaactatcagtcatgt |
5481015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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