View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_2 (Length: 812)

Name: NF18982_high_2
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_2
NF18982_high_2
[»] chr3 (15 HSPs)
chr3 (17-805)||(34497370-34498157)
chr3 (17-805)||(27608901-27609687)
chr3 (17-711)||(31504576-31505278)
chr3 (707-805)||(55199602-55199700)
chr3 (709-806)||(42340274-42340371)
chr3 (703-806)||(11020177-11020280)
chr3 (707-802)||(53497123-53497218)
chr3 (706-806)||(24176860-24176960)
chr3 (713-800)||(647166-647253)
chr3 (711-806)||(46007394-46007489)
chr3 (739-805)||(19117718-19117784)
chr3 (707-806)||(31341722-31341825)
chr3 (724-806)||(2615591-2615673)
chr3 (724-805)||(27747683-27747764)
chr3 (709-806)||(2121174-2121271)
[»] chr7 (15 HSPs)
chr7 (711-805)||(22289336-22289430)
chr7 (707-806)||(29200952-29201051)
chr7 (708-806)||(30493607-30493705)
chr7 (707-806)||(3601743-3601842)
chr7 (704-805)||(3275122-3275223)
chr7 (709-806)||(16732026-16732123)
chr7 (709-806)||(17710160-17710257)
chr7 (707-802)||(16098581-16098676)
chr7 (707-806)||(9328599-9328698)
chr7 (724-803)||(24139139-24139218)
chr7 (709-788)||(44480893-44480972)
chr7 (738-806)||(30824491-30824559)
chr7 (739-806)||(17877521-17877588)
chr7 (725-806)||(1581725-1581806)
chr7 (756-806)||(47580015-47580065)
[»] chr5 (16 HSPs)
chr5 (707-805)||(8388177-8388275)
chr5 (707-805)||(26597455-26597553)
chr5 (716-805)||(12660416-12660505)
chr5 (707-802)||(4268190-4268285)
chr5 (707-806)||(41940734-41940833)
chr5 (709-803)||(20205048-20205142)
chr5 (704-806)||(25730896-25730998)
chr5 (707-806)||(34652251-34652350)
chr5 (707-806)||(15988746-15988845)
chr5 (707-802)||(27292525-27292620)
chr5 (711-793)||(30222848-30222930)
chr5 (707-806)||(32632606-32632705)
chr5 (707-779)||(11375537-11375609)
chr5 (707-791)||(22767269-22767353)
chr5 (707-806)||(27532903-27533002)
chr5 (734-806)||(23074950-23075022)
[»] chr4 (20 HSPs)
chr4 (708-805)||(51259527-51259624)
chr4 (707-806)||(37245849-37245948)
chr4 (709-806)||(29655663-29655760)
chr4 (707-806)||(41835308-41835407)
chr4 (704-806)||(32577045-32577147)
chr4 (710-804)||(43840305-43840399)
chr4 (707-804)||(28537786-28537883)
chr4 (715-804)||(55735108-55735197)
chr4 (707-805)||(56065720-56065822)
chr4 (707-806)||(26422599-26422698)
chr4 (709-806)||(24989931-24990027)
chr4 (709-806)||(47226327-47226424)
chr4 (709-806)||(49951406-49951503)
chr4 (709-806)||(51734969-51735066)
chr4 (707-806)||(2064944-2065043)
chr4 (707-806)||(28426274-28426373)
chr4 (707-806)||(49119397-49119496)
chr4 (706-806)||(44936079-44936179)
chr4 (736-806)||(18442144-18442214)
chr4 (707-791)||(21321618-21321704)
[»] chr1 (15 HSPs)
chr1 (707-805)||(48949722-48949820)
chr1 (707-805)||(51113406-51113504)
chr1 (707-806)||(2885314-2885413)
chr1 (707-806)||(44602843-44602942)
chr1 (707-806)||(5609430-5609529)
chr1 (707-802)||(44527344-44527439)
chr1 (711-805)||(25682746-25682840)
chr1 (718-806)||(21031251-21031339)
chr1 (707-806)||(36733787-36733886)
chr1 (708-806)||(4395250-4395348)
chr1 (706-802)||(52109543-52109639)
chr1 (433-502)||(51686502-51686571)
chr1 (707-806)||(16816794-16816896)
chr1 (715-806)||(24538586-24538677)
chr1 (707-789)||(48166328-48166410)
[»] chr2 (13 HSPs)
chr2 (707-806)||(34695901-34696000)
chr2 (707-806)||(34718313-34718412)
chr2 (704-806)||(1417978-1418080)
chr2 (707-806)||(88650-88749)
chr2 (707-806)||(12130635-12130734)
chr2 (707-803)||(22845627-22845723)
chr2 (707-806)||(9710046-9710145)
chr2 (708-806)||(13109866-13109964)
chr2 (712-806)||(26198778-26198872)
chr2 (708-806)||(11292060-11292157)
chr2 (709-806)||(44017315-44017412)
chr2 (709-803)||(14827173-14827267)
chr2 (753-806)||(35158842-35158895)
[»] chr6 (11 HSPs)
chr6 (709-806)||(28107232-28107329)
chr6 (726-805)||(34104463-34104542)
chr6 (714-803)||(27443029-27443117)
chr6 (707-806)||(15605991-15606090)
chr6 (708-806)||(15053172-15053270)
chr6 (709-806)||(19690876-19690973)
chr6 (708-806)||(30801988-30802086)
chr6 (715-802)||(29368057-29368144)
chr6 (709-806)||(14680255-14680352)
chr6 (708-806)||(11731666-11731764)
chr6 (763-806)||(21944625-21944668)
[»] chr8 (12 HSPs)
chr8 (704-802)||(23854020-23854118)
chr8 (707-806)||(185588-185687)
chr8 (707-803)||(8451123-8451219)
chr8 (716-806)||(11870364-11870454)
chr8 (708-806)||(33642761-33642859)
chr8 (707-806)||(478053-478152)
chr8 (707-806)||(598234-598333)
chr8 (707-806)||(7127314-7127413)
chr8 (707-806)||(40588727-40588826)
chr8 (709-806)||(13415116-13415213)
chr8 (708-806)||(37712166-37712263)
chr8 (709-806)||(3606736-3606833)
[»] scaffold0003 (1 HSPs)
scaffold0003 (714-803)||(44244-44332)
[»] scaffold0446 (1 HSPs)
scaffold0446 (707-805)||(277-379)
[»] scaffold0922 (1 HSPs)
scaffold0922 (715-806)||(261-352)


Alignment Details
Target: chr3 (Bit Score: 714; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 17 - 805
Target Start/End: Complemental strand, 34498157 - 34497370
Alignment:
Q  17 catatatgacttattt-caggtttatttctgtgcaacacaaaaatatttcatttgggaaagtcacggttcatctttttcatctgctgatgatcatgtctt 115  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  34498157 catatatgacttattttcaggtttatttctatgcaacacaaaaatatttcatttgagaaagttacggttcatctttttcatccgctgatgatcatgtctt 34498058  T
Q  116 ttctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcgcgtataaagaacgtatgtttttgttcatagttagacttaattttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34498057 ttctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcgcgtataaagaacgtatgtttttgttcatagttagacttaattttt 34497958  T
Q  216 aaattaattgtcacttcatacttggtcacttcaatgtttattacaagtcttaatgggaaaaatatcaggtttattaaattactctactatttattcaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34497957 aaattaattgtcacttcatacttggtcacttcaatgtttattacaaatcttaatgggaaaaatatcaggtttattaaattactctactatttattcaaaa 34497858  T
Q  316 gtcaatagttatgacggtcttgttataaacagaataagattgtgaatcgtccgttggctgggacttctaaaaggggaaacacagcagaagaagatgaaag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34497857 gtcaatagttatgacggtcttgttataaacagaataagattgtgaatcgtccgttggctgggacttctaaaaggggaaacacagcagaagaagatgaaag 34497758  T
Q  416 tttatcagcaaagctcctgaaagatgaaaagcaatgtgcagagcatgtaatgctggtcgatttggggcgcaatgatgttggaaaggttttttctgtactt 515  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  34497757 tttatcagcaaagctcttgaaagatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactt 34497658  T
Q  516 tcactttaatggatgttcctatttgttaagcatgttacattataatcttatacaatagtttgcgctattattatttttatttaaagaagatgttgccagt 615  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  34497657 tcactttaatagatgttcctatttgttaagcatgttacattataatcttat-caatagtttgtgctattatt-tttttatttaaagaagatgttgccagt 34497560  T
Q  616 cttgtttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggttgtct 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34497559 cttgtttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggttgtct 34497460  T
Q  716 tcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  34497459 tcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgttcctagtattattt 34497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 17 - 805
Target Start/End: Complemental strand, 27609687 - 27608901
Alignment:
Q  17 catatatgacttattt-caggtttatttctgtgcaacacaaaaatatttcatttgggaaagtcacggttcatctttttcatctgctgatgatcatgtctt 115  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  27609687 catatatgacttattttcaggtttatttctatgcaacacaaaaatatttcatttgagaaagtaacggttcatctttttcatccgctgatgatcatgtctt 27609588  T
Q  116 ttctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcgcgtataaagaacgtatgtttttgttcatagttagacttaattttt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27609587 ttctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcacgtataaagaacgtatgtttttgttcatagttagacttaattttt 27609488  T
Q  216 aaattaattgtcacttcatacttggtcacttcaatgtttattacaagtcttaatgggaaaaatatcaggtttattaaattactctactatttattcaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  27609487 aaattaattgtcacttcatacttggtcacttcaatgtttattacaaatcttaatgggaaaaatataaggtttattaaattactctaatatttattcaaaa 27609388  T
Q  316 gtcaatagttatgacggtcttgttataaacagaataagattgtgaatcgtccgttggctgggacttctaaaaggggaaacacagcagaagaagatgaaag 415  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27609387 atcaatagttatgacggtcttgttataaacagaataagattgtgaatcgtccgttggctgggacttctaaaaggggaaacacagcagaagaagatgaaag 27609288  T
Q  416 tttatcagcaaagctcctgaaagatgaaaagcaatgtgcagagcatgtaatgctggtcgatttggggcgcaatgatgttggaaaggttttttctgtactt 515  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  27609287 tttatcagcaaagctcttgaaagatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactt 27609188  T
Q  516 tcactttaatggatgttcctatttgttaagcatgttacattataatcttatacaatagtttgcgctattattatttttatttaaagaagatgttgccagt 615  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||   ||||||||||||||    
T  27609187 tcactttaatagatgttcctatttgttaagcatgttacattataatcttatacaatagtttgcgctattattttatttattta---aagatgttgccagt 27609091  T
Q  616 cttgtttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggttgtct 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27609090 cttgtttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggttgtct 27608991  T
Q  716 tcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27608990 tcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattattt 27608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 711
Target Start/End: Original strand, 31504576 - 31505278
Alignment:
Q  17 catatatgacttattt-caggtttatttctgtgcaacac--aaaaatatttcatttgggaaagtcacggttcatctttttcatctgctgatgatcatgtc 113  Q
    |||||||||||||||| ||||||||||||| || |||||  ||||||||||||| ||||||||||  |||||||||||||||||  ||||||||||||||    
T  31504576 catatatgacttatttgcaggtttatttctatgaaacacgtaaaaatatttcatgtgggaaagtcgtggttcatctttttcatccactgatgatcatgtc 31504675  T
Q  114 tttt-ctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcgcgtataaagaacgtatgtttttgttcatagttagacttaatt 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31504676 tttttctatacaggctaggggatgtattttggttgcttcaagtccagagattcttgcacgtataaagaatgtatgtttttgttcatagttagacttaatt 31504775  T
Q  213 tttaaattaattgtc---acttcata---cttggtcacttcaatgtttattacaagtcttaa-tgggaaaaatatcaggtttattaaattactctactat 305  Q
    ||||||||||||||    ||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  31504776 tttaaattaattgttgttacttcataatacttggtcacttcaatgtttattacaagtcttaaatgggaaaaatatcaggtttattaaattactctaccat 31504875  T
Q  306 ttattcaaaagtcaatagttatgacggtcttgttataaacagaataagattgtgaatcgtccgttggctgggacttctaaaaggggaaacacagcagaag 405  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||    
T  31504876 ttattctaaagtgaatagttatcacggtcttgttataaacagaataagattgtgaaccgtccgttggctgggactgctaaaaggggcaacacaccagaag 31504975  T
Q  406 aagatgaaagtttatcagcaaagctcctgaaagatgaaaagcaatgtgcagagcatgtaatgctggtcgatttggggcgcaatgatgttggaaaggtttt 505  Q
    | ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  31504976 aggatgaaaatttatcagcaaagctcttgaaagatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttg 31505075  T
Q  506 ttctgtactttcactttaatggatgttcctatttgttaagcatgttacattataatcttatacaatagtttgcgctattattatttttatttaaagaaga 605  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||||| ||||||| | | ||||||   ||||    
T  31505076 ttctgtattttcactttaatggatgttcctatttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtattta---aaga 31505172  T
Q  606 tgttgccagtcttgtttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataac 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31505173 tgttgccagtcttgtttcttatattatgtttactgtaatctctattggacttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataac 31505272  T
Q  706 tgggtt 711  Q
    ||||||    
T  31505273 tgggtt 31505278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 55199602 - 55199700
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  55199602 gggttgtcttcaagtccgactcagctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctagtattattt 55199700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 42340371 - 42340274
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  42340371 gttgtcttcgagtcagactcagctactttagtgcaagctctgtcgtctccgggccatggtgattcagaattctatgctattgtttctaatattattta 42340274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 703 - 806
Target Start/End: Complemental strand, 11020280 - 11020177
Alignment:
Q  703 aactgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    ||||||||||||||||||||||||| | |||||| |||| |||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  11020280 aactgggttgtcttcgagtctgacttaactactccagtgtaaggtctatcgtctccgggccatggtgattcagaattctgtgctattgtttctagtatta 11020181  T
Q  803 ttta 806  Q
    ||||    
T  11020180 ttta 11020177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 53497123 - 53497218
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  53497123 gggttgtcttcgagtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatgctattgtttctagtatta 53497218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 706 - 806
Target Start/End: Original strand, 24176860 - 24176960
Alignment:
Q  706 tgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||| ||| ||||||||||| ||||| || |||||||| |||||||||||||    
T  24176860 tgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattcggaattctaagctattgtatctagtattattt 24176959  T
Q  806 a 806  Q
    |    
T  24176960 a 24176960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 713 - 800
Target Start/End: Complemental strand, 647253 - 647166
Alignment:
Q  713 tcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtat 800  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||| | |||||| ||||||    
T  647253 tcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgattcggaattctatgttgttgtttatagtat 647166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 711 - 806
Target Start/End: Original strand, 46007394 - 46007489
Alignment:
Q  711 tgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||| || ||| |||||||||||||| |  ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  46007394 tgtcttcgagtccgattcaactactctagtgcaaactatatcgtctccgggccatggcgattcggaattttatgctattgtttctagcattattta 46007489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 739 - 805
Target Start/End: Complemental strand, 19117784 - 19117718
Alignment:
Q  739 gtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19117784 gtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttttagtattattt 19117718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 31341825 - 31341722
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatc----gtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    ||||| ||||||| ||||||||  |||||||||||||||| |||||    ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  31341825 gggttatcttcgaatctgactccactactctagtgcaagctctatcctacgtctccgggtcatggtgattcagaattttatactattgtttctaatatta 31341726  T
Q  803 ttta 806  Q
    ||||    
T  31341725 ttta 31341722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 724 - 806
Target Start/End: Original strand, 2615591 - 2615673
Alignment:
Q  724 gactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||| |||||||||||| ||| |||||||||  | ||||||||||||||||||| |||| |||||||| ||||||||||||    
T  2615591 gactcaactactctagtgcgagctctatcgtctttgtgccatggtgattcagaattctatgatattgtttttagtattattta 2615673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 724 - 805
Target Start/End: Complemental strand, 27747764 - 27747683
Alignment:
Q  724 gactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||| ||| || ||||||| ||  |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||    
T  27747764 gactccgcttctttagtgcaggctttatcgtctccgggccatggtgattcaaaattctatgctattgtttttagtattattt 27747683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 2121174 - 2121271
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| || ||||| |||| | |||||||| ||||||| |||| |||||  ||||||| | ||||| |||||| ||||||||||||||||||||||||    
T  2121174 gttgtttttgagtccgacttaactactctaatgcaagctctattgtctctaggccatgattattcataattttgtgctattgtttctagtattattta 2121271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 711 - 805
Target Start/End: Original strand, 22289336 - 22289430
Alignment:
Q  711 tgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22289336 tgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 22289430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 29201051 - 29200952
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29201051 gggttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaattctatgctattgtttctagtattattta 29200952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 30493705 - 30493607
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| ||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30493705 ggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctattgtttatagtattattta 30493607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 3601743 - 3601842
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||| |||||||| |||||| ||||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  3601743 gggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctagtattattta 3601842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 704 - 805
Target Start/End: Original strand, 3275122 - 3275223
Alignment:
Q  704 actgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||| |||||||||    
T  3275122 actgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctaggccacgatgattcataattttatgctattgtttttagtattat 3275221  T
Q  804 tt 805  Q
    ||    
T  3275222 tt 3275223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 16732026 - 16732123
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| |||||  |||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  16732026 gttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattattta 16732123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 17710160 - 17710257
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| |||||  |||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  17710160 gttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattattta 17710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 16098581 - 16098676
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  16098581 gggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatgatattgtttctagtatta 16098676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 9328698 - 9328599
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||| ||||||||||| | ||||||||||||||| ||||||||  |||| |||||| |||||||||| |||||  |||||||||||||||||||    
T  9328698 gggttgtcttggagtctgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgcgtttgtttctagtattattta 9328599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 724 - 803
Target Start/End: Original strand, 24139139 - 24139218
Alignment:
Q  724 gactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||||||||||||||||| || ||||||||||| |||| |||||   ||||||||||||||||||||||||||||    
T  24139139 gactcagctactctagtgcaagctctgtcgtctccgggtcatgttgatttgaaattttatgctattgtttctagtattat 24139218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 709 - 788
Target Start/End: Original strand, 44480893 - 44480972
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctat 788  Q
    |||||||||||||| ||||| ||||||||| ||||| || ||||||||||||| ||||||||||| ||||||||||||||    
T  44480893 gttgtcttcgagtccgactccgctactctactgcaaacgttatcgtctccgggtcatggtgattcggaattttatgctat 44480972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 738 - 806
Target Start/End: Complemental strand, 30824559 - 30824491
Alignment:
Q  738 agtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||| || |||||||||| ||| ||||||||||||||||| |||| ||||||||||||| |||||||    
T  30824559 agtgcatgctctatcgtctctgggtcatggtgattcagaattctatgttattgtttctagtcttattta 30824491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 739 - 806
Target Start/End: Original strand, 17877521 - 17877588
Alignment:
Q  739 gtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||| ||||||| |  ||| |||||||||||  |||| ||||||||||||||||||||||||||    
T  17877521 gtgcaagctctatcgtttatgggtcatggtgattcgtaattctatgctattgtttctagtattattta 17877588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 806
Target Start/End: Original strand, 1581725 - 1581806
Alignment:
Q  725 actcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| |||| ||| ||||| | ||||||||||||| ||||||||||||  |||| ||||| ||||||| || |||||||||    
T  1581725 actcatctacactaatgcaaactctatcgtctccggaccatggtgattcgaaattctatgccattgtttataatattattta 1581806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 756 - 806
Target Start/End: Original strand, 47580015 - 47580065
Alignment:
Q  756 tccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||||||||| |  ||||||||||  ||||||||||||||    
T  47580015 tccgggccatggtgattcagagtcctatgctattggatctagtattattta 47580065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 8388177 - 8388275
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  8388177 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctattgtttccagtattattt 8388275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 707 - 805
Target Start/End: Complemental strand, 26597553 - 26597455
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26597553 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttattgtttctagtattattt 26597455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 716 - 805
Target Start/End: Original strand, 12660416 - 12660505
Alignment:
Q  716 tcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  12660416 tcgagtctgactcagctactctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctagtattattt 12660505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 4268190 - 4268285
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    ||||| |||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4268190 gggttttcttcgagtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 4268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 41940833 - 41940734
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| |||||| |||||||||||||| | |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||    
T  41940833 gggttgtcttcgagtccgactcaactactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctagtattattta 41940734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 709 - 803
Target Start/End: Original strand, 20205048 - 20205142
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    |||||||||||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  20205048 gttgtcttcgagtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctagtattat 20205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 704 - 806
Target Start/End: Original strand, 25730896 - 25730998
Alignment:
Q  704 actgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    |||| |||||||||||||| |||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||| |||| ||||||||||||||||||    
T  25730896 actgagttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttattgtttctagtattat 25730995  T
Q  804 tta 806  Q
    |||    
T  25730996 tta 25730998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 34652350 - 34652251
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| | |||||  |||||||||||||||| ||| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  34652350 gggttgtcttcgagcccgactcgactactctagtgcaagctctaccgtctctgggccatggtgattcagaattatatgttattgtttctagtattattta 34652251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 15988845 - 15988746
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| |||| | ||||||||||||||||||| | ||||||||| | |||||||||||||| ||||| |||| |||||||||||||||||||||    
T  15988845 gggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctagtattattta 15988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 27292525 - 27292620
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||  |||||| || ||||||||||| | ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  27292525 gggttgtcttcgagttcgactcatctgctctagtgcaaactctatcgtctccaggccatggtgatttggaattttatgctattgtttctagtatta 27292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 711 - 793
Target Start/End: Complemental strand, 30222930 - 30222848
Alignment:
Q  711 tgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgttt 793  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||| |||||||||||||    
T  30222930 tgtcttcgaatctgactcagctactctagtgcaagcgctatcgtcttcgggtcacggtgattcggaattctatgctattgttt 30222848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 32632606 - 32632705
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||| |||||||||||| ||||| ||||| ||||  ||||||||||| ||||| ||||||||||||| ||||  |||||||||| |||||||||    
T  32632606 gggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgattcagaattctatgacattgtttctaatattattta 32632705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 707 - 779
Target Start/End: Complemental strand, 11375609 - 11375537
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaatt 779  Q
    |||||||||| |||||||| ||| ||| |||||||||||| ||||||||||||| |||||||||||| |||||    
T  11375609 gggttgtctttgagtctgattcatctattctagtgcaagctctatcgtctccggtccatggtgattcggaatt 11375537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 707 - 791
Target Start/End: Complemental strand, 22767353 - 22767269
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgt 791  Q
    ||||||||||||||| |||||| | ||||||||||||||| ||||||||  |||| |||||| |||||||||| ||||| |||||    
T  22767353 gggttgtcttcgagtttgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgcgattgt 22767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 27533002 - 27532903
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||| |||||||| ||||  ||| || |||||||  |  ||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||    
T  27533002 gggttgttttcgagtccgactttgcttctttagtgcagactttatcgtctccgggtcatggtgattcagaattctttgctattgtttcaagtattattta 27532903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 734 - 806
Target Start/End: Original strand, 23074950 - 23075022
Alignment:
Q  734 ctctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||  |||||||| ||| ||||||||||||| |||| |||| |||||||| ||||||||||||    
T  23074950 ctctagtgcaagctttatcgtcttcggtccatggtgattcataattctatgttattgtttatagtattattta 23075022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 708 - 805
Target Start/End: Complemental strand, 51259624 - 51259527
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctagtattattt 51259527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 37245948 - 37245849
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37245948 gggttgtcttcgagtctgactctgctactttagtgcaagctctttcgtctctgggccatggtgattcagaattctatgctattgtttctagtattattta 37245849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 29655760 - 29655663
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  29655760 gttgtcttcgagtctgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctagtattattta 29655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 41835407 - 41835308
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||  || ||| |||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  41835407 gggttgtcttcgagttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattcggaatcctatgctattgtttctagtattattta 41835308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 704 - 806
Target Start/End: Complemental strand, 32577147 - 32577045
Alignment:
Q  704 actgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  32577147 actgggttgtcttcgagtctgactctgctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattctatgcgattgtttatagtattat 32577048  T
Q  804 tta 806  Q
    |||    
T  32577047 tta 32577045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 710 - 804
Target Start/End: Complemental strand, 43840399 - 43840305
Alignment:
Q  710 ttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattatt 804  Q
    ||||||||||||  ||||||||||||||| ||||||| ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  43840399 ttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctagtattatt 43840305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 707 - 804
Target Start/End: Complemental strand, 28537883 - 28537786
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattatt 804  Q
    ||||||| ||| |||| |||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  28537883 gggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattctatgctattgtttctagtattatt 28537786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 55735108 - 55735197
Alignment:
Q  715 ttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattatt 804  Q
    |||||||| || ||| |||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  55735108 ttcgagtccgattcatctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctagtattatt 55735197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 56065720 - 56065822
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtg----attcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||    |||| |||||||||||||||||||||| |||||    
T  56065720 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctccagaccatggtgattaattcggaattttatgctattgtttctaatatta 56065819  T
Q  803 ttt 805  Q
    |||    
T  56065820 ttt 56065822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 26422698 - 26422599
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||  |||| ||| ||||||||||||| ||||| ||||||| ||||||||||||    
T  26422698 gggttgtcttcgagtctgactctgatactctagtgcaagctctatcgtcagcgggacatagtgattcagaattctatgcgattgtttttagtattattta 26422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 24990027 - 24989931
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||| |||| |||| || ||||||||||||||||||    
T  24990027 gttgtctttgagtctgactcagctactctagtgcaagctctaccgtctctgggccacggtgattcaaaattctatgtta-tgtttctagtattattta 24989931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 47226424 - 47226327
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| |||||||| |||||| ||||| ||| |||||| ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||    
T  47226424 gttgtgttcgagtccgactcatctactttagagcaagctctatcgtcttcaggccatggtgattcagatttatatgctattgtttctagtattattta 47226327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 49951406 - 49951503
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| |||||  ||||||||||||||||  |||| ||| |||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  49951406 gttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctagtattattta 49951503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 51735066 - 51734969
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||| | |||  |||||||||||||||| |||||||||| || ||||||||||||| |||| |||| |||||||||||||||||||||    
T  51735066 gttgtcttcgagtcaggctcctctactctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctagtattattta 51734969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 2064944 - 2065043
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||| ||||| |||||| |||||||||  ||||| ||||||||||| || |||||||||||  |||| ||||||||||||||||||||||||||    
T  2064944 gggttgtctttgagtcggactcatctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattatatgctattgtttctagtattattta 2065043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 28426274 - 28426373
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| |||||||||| | ||||||||||| ||| ||||||||  |||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  28426274 gggttgtcttcaagtctgactctgatactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattattta 28426373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 49119496 - 49119397
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| |||||||||| | ||||||||||| ||| ||||||||  |||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  49119496 gggttgtcttcaagtctgactctgatactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattattta 49119397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 706 - 806
Target Start/End: Complemental strand, 44936179 - 44936079
Alignment:
Q  706 tgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||| |||||||| ||||||  ||||||||||||| | ||||||| | ||||||| ||||||| |||||| |||| ||||||||||| ||||||||    
T  44936179 tgggttgtgttcgagtccgactcatttactctagtgcaaactctatcgttttcgggccacggtgatttagaattctatgttattgtttctattattattt 44936080  T
Q  806 a 806  Q
    |    
T  44936079 a 44936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 18442214 - 18442144
Alignment:
Q  736 ctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||  ||||||||  || |||||||||||||||||| ||||||||||||||||||||||||||    
T  18442214 ctagtgcaagctatatcgtctttggcccatggtgattcagaattctatgctattgtttctagtattattta 18442144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 707 - 791
Target Start/End: Original strand, 21321618 - 21321704
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaa--gcgctatcgtctccgggccatggtgattcagaattttatgctattgt 791  Q
    |||||||||||||||| |||||| ||||||||||||||  || |||| ||||| ||| ||||||||||||||||| |||| ||||||    
T  21321618 gggttgtcttcgagtccgactcatctactctagtgcaattgctctattgtctcagggtcatggtgattcagaattctatgttattgt 21321704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 707 - 805
Target Start/End: Complemental strand, 48949820 - 48949722
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48949820 gggttgtcttcgagttcaactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattattt 48949722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 51113406 - 51113504
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  51113406 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatgctattgtttctagtattattt 51113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 2885314 - 2885413
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||| || || ||||||||||||||||||||||||||    
T  2885314 gggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatgctattgtttctagtattattta 2885413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 44602843 - 44602942
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||| |||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  44602843 gggttgccttcgagtctaactccgctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctagtattattta 44602942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 5609430 - 5609529
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||  |||||| |||||||||||||| | |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  5609430 gggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtttctagtattattta 5609529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 44527344 - 44527439
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  44527344 gggttgtcttcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 44527439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 711 - 805
Target Start/End: Original strand, 25682746 - 25682840
Alignment:
Q  711 tgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||  |||||| |||||| ||| |||||||||||||||||||||    
T  25682746 tgtcttcgagtttgactcagctactctagtacaagctctatcgtctccgggccacagtgatttagaattctatactattgtttctagtattattt 25682840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 718 - 806
Target Start/End: Original strand, 21031251 - 21031339
Alignment:
Q  718 gagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||| ||| |||||||||||||||||    
T  21031251 gagtctgactcagctattctagtgcaagctctatcgtctccggactatggtgattcggaattttatgttatagtttctagtattattta 21031339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 36733787 - 36733886
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||||||||||    ||||||||||||||  |||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||    
T  36733787 gggttgtcttcgagtctgactctataactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctagtattattta 36733886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 708 - 806
Target Start/End: Original strand, 4395250 - 4395348
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||| ||||||||||  ||||| |||||||||||||||| ||||||||||  || ||||||||||||||||| ||| ||||||||| ||||||||||||    
T  4395250 ggttatcttcgagtccaactcatctactctagtgcaagctctatcgtctcaaggtcatggtgattcagaattctatcctattgtttatagtattattta 4395348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 706 - 802
Target Start/End: Original strand, 52109543 - 52109639
Alignment:
Q  706 tgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    ||||||||||| |||| ||| ||| |||||||||| ||||| |||| |||||||| |||||||||||| ||||| |||| |||||||||||||||||    
T  52109543 tgggttgtctttgagtgtgattcatctactctagtacaagctctattgtctccggaccatggtgattcggaattctatgttattgtttctagtatta 52109639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 51686571 - 51686502
Alignment:
Q  433 tgaaagatgaaaagcaatgtgcagagcatgtaatgctggtcgatttggggcgcaatgatgttggaaaggt 502  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  51686571 tgaatgatgaaaaacaatgtgcagaacatgtaatgctggtcgatttggggagaaatgatgttggaaaggt 51686502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 16816896 - 16816794
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatg---gtgattcagaattttatgctattgtttctagtattat 803  Q
    |||||||||||||||| |||||  |||||||||| ||||  ||| |||||||| ||||||   ||||||| ||||| || ||||||||||||||||||||    
T  16816896 gggttgtcttcgagtccgactcgtctactctagttcaagttctaccgtctccgagccatggacgtgattcggaattctacgctattgtttctagtattat 16816797  T
Q  804 tta 806  Q
    |||    
T  16816796 tta 16816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 715 - 806
Target Start/End: Original strand, 24538586 - 24538677
Alignment:
Q  715 ttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||  |||||||||||||||  |||||  || |||| ||| ||||||||||||| || |||||| ||||||||||||||||    
T  24538586 ttcgagtctgactcttctactctagtgcaagatctatctgcttcgggtcatagtgattcagaattctacgctattatttctagtattattta 24538677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 707 - 789
Target Start/End: Original strand, 48166328 - 48166410
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctatt 789  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||| ||||  || | |||||||| ||||||| |||||||||    
T  48166328 gggttgtcttcgagtctgattcagctactctattgcaagctctatagtcttgggacgatggtgatacagaattctatgctatt 48166410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 34696000 - 34695901
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  34696000 gggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtataattta 34695901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 34718412 - 34718313
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  34718412 gggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtataattta 34718313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 704 - 806
Target Start/End: Complemental strand, 1418080 - 1417978
Alignment:
Q  704 actgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    |||||||||||||||||||||||||| |||||||||| ||||| |||| ||||| || | |||||||||||||||| |||||||||||||||||||||||    
T  1418080 actgggttgtcttcgagtctgactcatctactctagttcaagctctattgtctctggactatggtgattcagaattctatgctattgtttctagtattat 1417981  T
Q  804 tta 806  Q
    |||    
T  1417980 tta 1417978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 88650 - 88749
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||||||||  |  ||||||||||||||||| |||||||||||||| |||||||||||    
T  88650 gggttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctattgtttccagtattattta 88749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 12130734 - 12130635
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| ||||||||||||||||| |||||||||| ||||| ||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  12130734 gggttatcttcgagtctgactcatctactctagtccaagctctatcatcttcgggacatggtgattcagaattctatgctattatttctagtattattta 12130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 707 - 803
Target Start/End: Original strand, 22845627 - 22845723
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||||||||||  ||| | |||||||||||||||| ||||||||||| |  ||||||||||||||||| || ||||||||||||||||||||    
T  22845627 gggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaattctaggctattgtttctagtattat 22845723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 9710046 - 9710145
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||||  | ||||||||||||||| ||||||||  |||| |||||| ||||| |||| ||||| ||||||||||||||||||||    
T  9710046 gggttgtcttcgagtctgactttgatactctagtgcaagctctatcgtcagcgggacatggtaattcataattctatgcaattgtttctagtattattta 9710145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 13109964 - 13109866
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| |||||  ||||||||||| |||| ||||||||| |||||||||||||||  ||||| || ||||||||||| |||||||||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatttggaattataagctattgtttccagtattattta 13109866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 712 - 806
Target Start/End: Original strand, 26198778 - 26198872
Alignment:
Q  712 gtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||  || |||||||| |   |||| ||||||||||||||||||||||||||    
T  26198778 gtcttcgagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgaattgaaattctatgctattgtttctagtattattta 26198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 11292157 - 11292060
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||| ||||| |||||| |||||||||||||||| ||||||| | ||| ||||| ||||||| ||||||||| |||||||| ||||||||||||    
T  11292157 ggttgtctttgagtccgactcatctactctagtgcaagctctatcgttttcgg-ccatgatgattcaaaattttatgttattgtttatagtattattta 11292060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 44017412 - 44017315
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||| | |||| |||||||||| ||||||||||||   |||||| ||| |||||| ||||| ||||||||| ||||||||||    
T  44017412 gttgtcttcgagtctgactccgttactttagtgcaagctctatcgtctccgaaacatggtcattaagaattatatgccattgtttcttgtattattta 44017315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 709 - 803
Target Start/End: Original strand, 14827173 - 14827267
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    |||||||| || ||||||| |||||||||||||||||| ||||||| |  ||| |||||||||||  |||| ||||||||| ||| || ||||||    
T  14827173 gttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttgggtcatggtgattcgaaattctatgctattatttataatattat 14827267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 753 - 806
Target Start/End: Complemental strand, 35158895 - 35158842
Alignment:
Q  753 gtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||| ||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  35158895 gtcttcgggccatgatgattcagaattctatgctattgtttctattattattta 35158842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 28107232 - 28107329
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  28107232 gttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctagtattattta 28107329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 726 - 805
Target Start/End: Complemental strand, 34104542 - 34104463
Alignment:
Q  726 ctcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 805  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  34104542 ctcagctactctagtgcaagcgctatcgtctccggaccatggtgattcagaattttatgctattgtttttagtattattt 34104463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 714 - 803
Target Start/End: Original strand, 27443029 - 27443117
Alignment:
Q  714 cttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  27443029 cttcgagttggactcagctactctagtgca-gcgctatcgtctctaggccatggtgattcagaattttatgctattgtttctagtattat 27443117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 15606090 - 15605991
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||||||  || |||||||||||||||   ||||||||||||||||||||||||||    
T  15606090 gggttgtcttcaagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgattcagaacactatgctattgtttctagtattattta 15605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 15053270 - 15053172
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |||||| ||| || || |||||||||    
T  15053270 ggttgtcttcgagtccgactcagctactctagtgcaaacgctatcgtcttcgggccatggtgattcggaattctatgctgttgcttataatattattta 15053172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 19690973 - 19690876
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| | | ||||||||||  ||||| ||||  ||||||||||||||||||||    
T  19690973 gttgtcttcgagtctgactcagctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatgtcattgtttctagtattattta 19690876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 30802086 - 30801988
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| || ||||||||| |||||||||| ||||||| |||| |||||||||| |  ||||| |||| |||||||||||||||||||||    
T  30802086 ggttgtcttcgagtccgattcagctactttagtgcaagctctatcgtttccgagccatggtgacttggaattctatgttattgtttctagtattattta 30801988  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 715 - 802
Target Start/End: Complemental strand, 29368144 - 29368057
Alignment:
Q  715 ttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||||||| |||||| ||||| |||||||||| |||||||||||||| ||| |||||||  |||| |||||||||| |||||||||||    
T  29368144 ttcgagtccgactcatctactatagtgcaagctctatcgtctccgggtcatagtgattcgtaattctatgctattgcttctagtatta 29368057  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 14680255 - 14680352
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||| || || |||||  |||||||| ||||||| ||||| |||||||||  |||||||||| |||| | ||||||||||||||||||||||||    
T  14680255 gttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctagtattattta 14680352  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 11731764 - 11731666
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||||||| |||||    | | |||||||||| |||| ||||||||||||||||| ||| || || ||||||| ||||||||||| ||||||    
T  11731764 ggttgtcttcgagtccgactctttcaatatagtgcaagctctattgtctccgggccatggtggttcggagttctatgctactgtttctagtaatattta 11731666  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 763 - 806
Target Start/End: Complemental strand, 21944668 - 21944625
Alignment:
Q  763 catggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||| |||||||||| ||||||||||||||||||||||||||    
T  21944668 catggtaattcagaattctatgctattgtttctagtattattta 21944625  T

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Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 704 - 802
Target Start/End: Original strand, 23854020 - 23854118
Alignment:
Q  704 actgggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtatta 802  Q
    |||| |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23854020 actgagttgtcttcgagtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctagtatta 23854118  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 185687 - 185588
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||| |||||||||||| |||||| |||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  185687 gggttgtctacgagtctgactctgctactttagtgcaagctctttcgtctccggaccatggtgattcagaattctatgctattgtttctagtattattta 185588  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 707 - 803
Target Start/End: Complemental strand, 8451219 - 8451123
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||| || ||||||||||| |||||||||| |||||| |||||||||||    
T  8451219 gggttgtcttcgagtctgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaattttatgttattgtgtctagtattat 8451123  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 716 - 806
Target Start/End: Original strand, 11870364 - 11870454
Alignment:
Q  716 tcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||||||||||||||| |||||||| |||| ||||| | ||||||||||||| || || ||||||||||||||||||||||||||    
T  11870364 tcgagtctgactcagctactcttgtgcaagctctattgtctcggagccatggtgattcggatttctatgctattgtttctagtattattta 11870454  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 708 - 806
Target Start/End: Complemental strand, 33642859 - 33642761
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||| ||||  ||||| |||||||| ||||||| || |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  33642859 ggttgtcttcaagtccaactcatctactctaatgcaagctctgtcgtctccgggccatggtgattcagaattcaatgatattgtttctagtattattta 33642761  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 478152 - 478053
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| ||||||| ||||||||  |||||||||||||||| ||||||||||||||  |||||||||| | |||||||| ||||||||||| |||||||||    
T  478152 gggttatcttcgaatctgactctactactctagtgcaagctctatcgtctccgggttatggtgattcggtattttatgatattgtttctaatattattta 478053  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 598333 - 598234
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||||||||| |||| |||| |||||||||||||||||| ||||||||| | || |||||||||||  | || ||||||||||||||||||||||||||    
T  598333 gggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattcgaagttctatgctattgtttctagtattattta 598234  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 7127314 - 7127413
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||| ||||||||||||||  |||||| |||||||||| || |||||||||||||||||||||| || ||| |||| ||||||||| |||||||||||    
T  7127314 gggttgccttcgagtctgactatgctactttagtgcaagctctttcgtctccgggccatggtgatttagtattctatgttattgtttcaagtattattta 7127413  T

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Target: chr8; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 40588826 - 40588727
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||||| |||||||| ||| ||||||||||| || | |||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||||||||    
T  40588826 gggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctattgtttatagtattattta 40588727  T

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Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 709 - 806
Target Start/End: Original strand, 13415116 - 13415213
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||| ||||| || ||  |||||||||||||||   ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  13415116 gttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaattttatgctattgtttttagtattattta 13415213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 708 - 806
Target Start/End: Original strand, 37712166 - 37712263
Alignment:
Q  708 ggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||| ||||| ||| |||| | |||||||||||| |||| |||| |||| ||| | |||||||||||||||  ||||||||||||||||||||||||||    
T  37712166 ggttatcttctagtttgaccctgctactctagtgtaagctctattgtcttcggac-atggtgattcagaatactatgctattgtttctagtattattta 37712263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 709 - 806
Target Start/End: Complemental strand, 3606833 - 3606736
Alignment:
Q  709 gttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    ||||| ||| |||| |||||| | ||| |||| ||| | |||||||||| ||| |||||||| |  ||||| ||||||||||||||||||||||||||    
T  3606833 gttgttttcaagtccgactcaacaactttagtacaaactctatcgtctcagggtcatggtgacttggaattctatgctattgtttctagtattattta 3606736  T

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Target: scaffold0003 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 714 - 803
Target Start/End: Complemental strand, 44332 - 44244
Alignment:
Q  714 cttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 803  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  44332 cttcgagttggactcagctactctagtgca-gcgctatcgtctctaggccatggtgattcagaattttatgctattgtttctagtattat 44244  T

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Target: scaffold0446 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 277 - 379
Alignment:
Q  707 gggttgtcttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtg----attcagaattttatgctattgtttctagtatta 802  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||    |||| |||||||||||||||||||||| |||||    
T  277 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctccagaccatggtgattaattcggaattttatgctattgtttctaatatta 376  T
Q  803 ttt 805  Q
    |||    
T  377 ttt 379  T

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Target: scaffold0922 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 715 - 806
Target Start/End: Complemental strand, 352 - 261
Alignment:
Q  715 ttcgagtctgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattta 806  Q
    |||||||| |||||| |||||||||||||||| ||||| ||||| || |||||| |||||||||| ||||||||||||||||||||||||||    
T  352 ttcgagtccgactcatctactctagtgcaagctctatcatctccaggtcatggtaattcagaattctatgctattgtttctagtattattta 261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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