View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_22 (Length: 496)

Name: NF18982_high_22
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_22
NF18982_high_22
[»] chr4 (3 HSPs)
chr4 (51-479)||(8321291-8321719)
chr4 (288-458)||(25229719-25229891)
chr4 (243-294)||(29629747-29629799)
[»] chr6 (2 HSPs)
chr6 (285-479)||(23905615-23905811)
chr6 (99-171)||(18603127-18603199)
[»] chr7 (2 HSPs)
chr7 (315-464)||(27223322-27223472)
chr7 (317-464)||(11728443-11728588)
[»] scaffold0008 (1 HSPs)
scaffold0008 (203-471)||(264121-264390)
[»] chr5 (1 HSPs)
chr5 (204-403)||(33699728-33699928)
[»] chr2 (4 HSPs)
chr2 (287-430)||(19993810-19993955)
chr2 (120-171)||(24226552-24226603)
chr2 (317-373)||(21506193-21506249)
chr2 (433-474)||(24226256-24226297)
[»] chr1 (6 HSPs)
chr1 (287-474)||(17621926-17622115)
chr1 (302-403)||(12085457-12085559)
chr1 (285-403)||(26645949-26646067)
chr1 (314-372)||(26330487-26330545)
chr1 (316-373)||(15984112-15984169)
chr1 (315-356)||(20185911-20185952)
[»] chr3 (2 HSPs)
chr3 (419-469)||(15487624-15487674)
chr3 (322-403)||(21806638-21806720)
[»] scaffold0021 (1 HSPs)
scaffold0021 (291-394)||(156500-156605)
[»] chr8 (4 HSPs)
chr8 (240-463)||(260534-260760)
chr8 (240-463)||(655161-655387)
chr8 (240-463)||(840896-841122)
chr8 (98-147)||(17748317-17748366)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 51 - 479
Target Start/End: Original strand, 8321291 - 8321719
Alignment:
Q  51 tttttattgcttctcaaccttgacaagatgttttgatcggttgatttgaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtgctt 150  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8321291 tttttattgcttctcaaccttgacaagatgttttgatcggttggtttgaagtatgtatcaaattcattttgatacgagaagagattagatgattgtgctt 8321390  T
Q  151 gttgctaaactatcaaataaaggataaataaactgtcacaaagaagttacattggttcactctaactaggctagcccaatctccataaaatgtgagatta 250  Q
    ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
T  8321391 gttgcaaaactatcaaataaaggataaagaagctgtcacaaagaagttacattggttcactctaactaggctagaacagtccccataaaatgtgagatta 8321490  T
Q  251 tccaataatggtgtctaagatacctctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagacttt 350  Q
    || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8321491 tctaataatggtgtctgagatacctctcagatgttgcacactttctcttcatttctggtctccttgaccttacaagttttggacaacctctttagacttt 8321590  T
Q  351 agctatcatacaatccacctttatacctaaagatgattaatgaaactttacaactcattacataattattttgtgatcttagtcttatcaatgatcaatt 450  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  8321591 agctatcatacaatccacctttatacctaaagataattaatgaaactttacaactcattacatgattattttgtgatcatagtcttatcaatgatcaatt 8321690  T
Q  451 tgatctcacaatgacatttctctcattct 479  Q
    |||||||||||||||||||||||||||||    
T  8321691 tgatctcacaatgacatttctctcattct 8321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 458
Target Start/End: Complemental strand, 25229891 - 25229719
Alignment:
Q  288 acactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatga 386  Q
    ||||||| ||||| |||||||| |   |||||||||||||| | || |||||||| |  ||||||||| || | |||||||||| ||| ||||||||  |    
T  25229891 acactttgtcttcttttctggtctagctgaccttacaagttctagataacctcttcatgctttagctaccacataatccaccttcatatcctaaagagaa 25229792  T
Q  387 ttaatgaaactttacaactcattacataa-ttattttgtgatcttagtcttatcaatgatcaatttgatctca 458  Q
    ||| ||||||||||||| | |||||| || || |||| |||||||  |||||  |||||||| ||||||||||    
T  25229791 ttagtgaaactttacaattgattacaaaatttgttttttgatcttgatcttaagaatgatcattttgatctca 25229719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 29629747 - 29629799
Alignment:
Q  243 tgagattatccaataatggtgtctaagata-cctctcaaatgttgcacacttt 294  Q
    |||||||||||||||||||||  | ||||| ||||||||||||| ||||||||    
T  29629747 tgagattatccaataatggtgcttgagataccctctcaaatgttacacacttt 29629799  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 479
Target Start/End: Complemental strand, 23905811 - 23905615
Alignment:
Q  285 tgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaaga 383  Q
    |||| |||||||||| ||||||||| | |  |||| || ||||||||||||| ||||| |||||||| ||| || |||||||  ||||||||| ||||||    
T  23905811 tgcaaactttctcttaatttctggtttacccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaaga 23905712  T
Q  384 tgattaatgaaactttacaactcattacataattattttgtgatcttagtcttatca-atgatcaatttgatctcacaatgacatttctctcattct 479  Q
     ||||| |||| ||||| |||| ||||||||||| ||||||||||||  ||||| ||  ||||||||||||||||||||| || ||| |||| ||||    
T  23905711 ggattagtgaagctttagaactgattacataatttttttgtgatcttgctcttaacatttgatcaatttgatctcacaataacctttatctctttct 23905615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 18603127 - 18603199
Alignment:
Q  99 aagtatgtatcaaattcattttgatacgagaagagatttgatgattgtgcttgttgctaaactatcaaataaa 171  Q
    |||||||||||||| | | |||||||| | || ||||| ||||||| |||||| | || ||||||||||||||    
T  18603127 aagtatgtatcaaaatgaatttgatacaataaaagattagatgattttgcttgcttctgaactatcaaataaa 18603199  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 315 - 464
Target Start/End: Complemental strand, 27223472 - 27223322
Alignment:
Q  315 tgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacat 413  Q
    ||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||| | |||| | ||||| |||| |||| ||||| | ||||     
T  27223472 tgaccgtacaagttttagacaacctctttagactttagataccacacaatccacctttatagcgtaaataagattagtgaagctttgcaactgaatacac 27223373  T
Q  414 aattattttgtgatcttagtcttatcaatgatcaatttgatctcacaatga 464  Q
    ||||  ||| ||||||   | ||| |||||||||||||||||||| |||||    
T  27223372 aattcctttatgatctagattttaacaatgatcaatttgatctcaaaatga 27223322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 464
Target Start/End: Original strand, 11728443 - 11728588
Alignment:
Q  317 accttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacataa 415  Q
    |||||| ||| ||||||||||   |||| ||| ||| || || |||||||||||||||| |||||||| |||||||||| ||||||||||  ||||| ||    
T  11728443 accttagaagatttggacaac---tttatactctagttaccacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaa 11728539  T
Q  416 ttattttgtgatcttagtcttatcaatgatcaatttgatctcacaatga 464  Q
    || |||||||||| |  |  || |||||||||||||||| |||||||||    
T  11728540 ttgttttgtgatcgtgattataacaatgatcaatttgatatcacaatga 11728588  T

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Target: scaffold0008 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 471
Target Start/End: Original strand, 264121 - 264390
Alignment:
Q  203 tggttcactctaactaggctagcccaatctccataaaatgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttca 301  Q
    ||||||||  ||||| |||||| |||||| ||| | | ||||||||| ||||||| ||||||| |||||||| ||| |||   |||||||| |  ||||     
T  264121 tggttcaccttaactgggctagtccaatccccacagactgtgagattttccaata-tggtgtcaaagataccctcttaaaatctgcacactcttacttct 264219  T
Q  302 tttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaacttta 400  Q
    |||||| | |   |||||||||||||||  |  ||||||||||||  ||||||| || ||||||| | |||||| |||||||| ||||| ||||  ||||    
T  264220 tttctgatctatctgaccttacaagtttaagttaacctctttagaacttagctaccacacaatccgcatttataacctaaagaggattagtgaagtttta 264319  T
Q  401 caactcattacataattattttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacatttct 471  Q
    |||||  | ||| |||| ||||||||||||  ||||| || ||||||| | ||| |||||||||| |||||    
T  264320 caactattaacacaattgttttgtgatcttgatcttaacagtgatcaaatggatatcacaatgacctttct 264390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 403
Target Start/End: Original strand, 33699728 - 33699928
Alignment:
Q  204 ggttcactctaactaggctagcccaatctccataaaatgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcat 302  Q
    ||||||| |||||||||||||     ||||||  || ||||||||| ||||||| |||||||| ||||||| ||||| ||  |||||||||||||||  |    
T  33699728 ggttcaccctaactaggctagtatggtctccactaactgtgagattttccaata-tggtgtctgagataccctctcagattctgcacactttctcttatt 33699826  T
Q  303 ttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttac 401  Q
    |||| || |     ||||||||| |||||| || |||||| |||||||||||   | |||||||||||||||| |||||||| ||||| |||| ||||||    
T  33699827 ttctagtctaaccaaccttacaaattttgggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaagctttac 33699926  T
Q  402 aa 403  Q
    ||    
T  33699927 aa 33699928  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 430
Target Start/End: Original strand, 19993810 - 19993955
Alignment:
Q  287 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 385  Q
    |||||||||||||| |||||||| | | | ||  |||||| ||| ||||||||||| ||| |||||||| || |||||||||||| ||| |||||||| |    
T  19993810 cacactttctcttcttttctggtctacctaacaatacaagatttagacaacctcttcagattttagctaccacacaatccaccttaataccctaaagagg 19993909  T
Q  386 attaatgaaactttacaactcattacataattatt-ttgtgatctt 430  Q
    |||| |||| ||||||| || |||| | |||| || ||||||||||    
T  19993910 attagtgaagctttacatcttattatacaattgttcttgtgatctt 19993955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 24226603 - 24226552
Alignment:
Q  120 tgatacgagaagagatttgatgattgtgcttgttgctaaactatcaaataaa 171  Q
    |||||| | ||||||||||||||||||||||| | |||||||||||||||||    
T  24226603 tgatacaataagagatttgatgattgtgcttgcttctaaactatcaaataaa 24226552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 21506193 - 21506249
Alignment:
Q  317 accttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 373  Q
    |||||||| |||||| |||||||||||||||||| || | || ||||||||||||||    
T  21506193 accttacatgttttgcacaacctctttagacttttgcaaccacacaatccaccttta 21506249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 24226297 - 24226256
Alignment:
Q  433 tcttatcaatgatcaatttgatctcacaatgacatttctctc 474  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  24226297 tcttaacaatgattaatttgatctcacaatgacctttctctc 24226256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 474
Target Start/End: Complemental strand, 17622115 - 17621926
Alignment:
Q  287 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 385  Q
    ||||||||||| |||||||| || | ||| ||| |||||||||||  || ||| ||  |||||||| || || |||||||||||||||| | |||||| |    
T  17622115 cacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcggactttagttaccacacaatccacctttatagcataaagagg 17622016  T
Q  386 attaatgaaactttacaactcattacataattatt-ttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacatttctctc 474  Q
    |||  |||| |||||||| |  ||||| |||| || ||||||| |   |||||||| |||||||||| ||||||||||||| | ||||||    
T  17622015 attggtgaagctttacaaatgcttacacaattgttcttgtgatttcgatcttatcattgatcaatttcatctcacaatgacctctctctc 17621926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 403
Target Start/End: Original strand, 12085457 - 12085559
Alignment:
Q  302 tttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaacttta 400  Q
    |||||||| | | ||||||||| ||||||||||||| |||| ||| |||| ||| || |||||  ||||||||||| |||| ||||||| ||||||||||    
T  12085457 tttctggtctacatgaccttactagttttggacaacatcttcagagtttaactaccacacaattaacctttataccttaaatatgattagtgaaacttta 12085556  T
Q  401 caa 403  Q
    |||    
T  12085557 caa 12085559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 26646067 - 26645949
Alignment:
Q  285 tgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacct-aaaga 383  Q
    ||||||| || |||||||| ||||| | |||| || |||||||||| ||||  ||||| |||||||| ||| || |||||||||||||||| || |||||    
T  26646067 tgcacacattatcttcatt-ctggtttacttggccatacaagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaaga 26645969  T
Q  384 tgattaatgaaactttacaa 403  Q
     ||||| |||| ||||||||    
T  26645968 agattagtgaagctttacaa 26645949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 26330487 - 26330545
Alignment:
Q  314 ttgaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttt 372  Q
    |||| |||||||||||||||||||||||| |||||||| | | || |||||||||||||    
T  26330487 ttgatcttacaagttttggacaacctcttcagactttaacaaccacacaatccaccttt 26330545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 15984112 - 15984169
Alignment:
Q  316 gaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 373  Q
    |||||||||||||||| ||| |||||  ||||||| || |||||||||||||||||||    
T  15984112 gaccttacaagttttgcacatcctctccagacttttgcaatcatacaatccaccttta 15984169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 20185952 - 20185911
Alignment:
Q  315 tgaccttacaagttttggacaacctctttagactttagctat 356  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  20185952 tgaccttacaagtttttgacagcctctttagactttggctat 20185911  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 15487674 - 15487624
Alignment:
Q  419 ttttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacattt 469  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  15487674 ttttgtgatcttgatcttaacaatgatcaatttgatctcacaatgacattt 15487624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 21806720 - 21806638
Alignment:
Q  322 acaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaa 403  Q
    ||||||||||||||  ||||| | |||||||||| || || ||||||||||||| |||||||| ||||| | || ||||||||    
T  21806720 acaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaagaagattactaaagctttacaa 21806638  T

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Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 156605 - 156500
Alignment:
Q  291 ctttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagacttt-agctatcatacaatccacctttat-acctaaagatgatt 388  Q
    |||||||||| |||||||| | ||| ||| || |||||||||||| ||| || ||||||| ||||| ||||||||| |||||||| ||||||| | ||||    
T  156605 ctttctcttcttttctggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggatt 156506  T
Q  389 aatgaa 394  Q
    ||||||    
T  156505 aatgaa 156500  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 463
Target Start/End: Complemental strand, 260760 - 260534
Alignment:
Q  240 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 338  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
T  260760 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 260662  T
Q  339 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattacataattatt-ttgtgatcttagtctt 436  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| |||| | || || || |||||||| ||||    
T  260661 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaatacacagtttttcttttgatcttaatctt 260562  T
Q  437 atca-atgatcaatttgatctcacaatg 463  Q
      ||  ||||||||||||| ||||||||    
T  260561 tacagttgatcaatttgatatcacaatg 260534  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 463
Target Start/End: Original strand, 655161 - 655387
Alignment:
Q  240 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 338  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
T  655161 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 655259  T
Q  339 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattacataattatt-ttgtgatcttagtctt 436  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| |||| | || || || |||||||| ||||    
T  655260 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaatacacagtttttcttttgatcttaatctt 655359  T
Q  437 atca-atgatcaatttgatctcacaatg 463  Q
      ||  ||||||||||||| ||||||||    
T  655360 tacagttgatcaatttgatatcacaatg 655387  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 463
Target Start/End: Original strand, 840896 - 841122
Alignment:
Q  240 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 338  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
T  840896 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 840994  T
Q  339 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattacataattatt-ttgtgatcttagtctt 436  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| |||| | || || || |||||||| ||||    
T  840995 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaatacacagtttttcttttgatcttaatctt 841094  T
Q  437 atca-atgatcaatttgatctcacaatg 463  Q
      ||  ||||||||||||| ||||||||    
T  841095 tacagttgatcaatttgatatcacaatg 841122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 17748366 - 17748317
Alignment:
Q  98 gaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtg 147  Q
    ||||||||||||||| | | |||||||| |||||||||| ||||||||||    
T  17748366 gaagtatgtatcaaaatgaatttgatacaagaagagattggatgattgtg 17748317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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