View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_23 (Length: 480)
Name: NF18982_high_23
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 3598866 - 3598405
Alignment:
| Q |
9 |
gattatactgatgtgattgtgtctaccctctctatattgtgtgttgatcgagattgctgaagnnnnnnnn-ggcttgctgcagctttagaaacacaaatt |
107 |
Q |
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| T |
3598866 |
gattaaactgatgtgactgtgtctaccctctctatattgtgtgttgatcgagattgctgaagaaaaaaaaaggcttgctgcagctttagaaacacaaatt |
3598767 |
T |
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| Q |
108 |
gcggaaggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattgta------gttactcttctctttt |
201 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
3598766 |
gcagatggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattggatacttggttactcttctctttt |
3598667 |
T |
|
| Q |
202 |
gaatagattattttcatgagttgttagttcatttctcacatatacttggaaaaaattcatatttttagatgttactggttatgttgagaaagacactgtc |
301 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598666 |
gaatagtttattttcatgagttgttagttcatttctcacatatacttggaaaaaattcatatttttagatgttactggttatgttgagaaagacactgtc |
3598567 |
T |
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| Q |
302 |
acggaaactgnnnnnnnnnnnnnnn-tcagcaaggctatggatgcgacgctagaagatttagagtaagtcttaatctattaacattactcaatgcagaat |
400 |
Q |
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| T |
3598566 |
acggaaactgaaaaaaatgaaaaaaatcagcaaggctatggatgcgacgctagaagatttagagtaagtcttaatctattaacattactcaatgcagaat |
3598467 |
T |
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| Q |
401 |
aattgctgataattacgtgctttttatttgattaatttacactttgtaggggggaatagaat |
462 |
Q |
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| T |
3598466 |
aattgctgataattacatgctttttatttgattaatttacactttgtaggggggaatagaat |
3598405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 184 - 462
Target Start/End: Original strand, 4356335 - 4356619
Alignment:
| Q |
184 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggaaaa--aattcatatttttagatgttactggtt |
281 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||| |||| |
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| T |
4356335 |
tagttactcttctcttttgaattgtttattttcaggagttgttagttcatttctcatatatacttggaaaatgaaatcatattttaagatgttattggtc |
4356434 |
T |
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| Q |
282 |
atgttgagaaagacactgtcacggaaactg-nnnnnnnnnnnnnnntcagcaaggctatggatgcgacgctagaagatttagagtaagtcttaatctatt |
380 |
Q |
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| T |
4356435 |
atgttgagaaagacactgtcaaggaaactgaaaaaaaatggaaaaatcagcaaggctacggttgtgacgctagaagatttagagcaagtcttaatctatt |
4356534 |
T |
|
| Q |
381 |
aacattactcaatgcagaataattgctgataattacgtg----ctttttatttgattaatttacactttgtaggggggaatagaat |
462 |
Q |
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||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||| ||||| ||| ||||||||||||| |
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| T |
4356535 |
aacattactcaatgcagaacaattgttgataattatgtgctaacttttaatttgattaatttgcacttcgta-gggggaatagaat |
4356619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 45221519 - 45221399
Alignment:
| Q |
184 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggaaaa--aattcatatttttagatgttactggtt |
281 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||| |||| |
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| T |
45221519 |
tagttactcttctcttttgaattgtttattttcatgagtttttagttcatttctcatatatacttggaaaatgaaatcatatttttagatgttattggtc |
45221420 |
T |
|
| Q |
282 |
atgttgagaaagacactgtca |
302 |
Q |
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||||||||||||||||||||| |
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| T |
45221419 |
atgttgagaaagacactgtca |
45221399 |
T |
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