View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_27 (Length: 437)

Name: NF18982_high_27
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_27
NF18982_high_27
[»] chr5 (16 HSPs)
chr5 (181-420)||(31280598-31280840)
chr5 (8-104)||(31280174-31280270)
chr5 (109-169)||(31280493-31280553)
chr5 (185-222)||(10106632-10106669)
chr5 (185-222)||(11246550-11246587)
chr5 (185-222)||(20186868-20186905)
chr5 (185-222)||(38040268-38040305)
chr5 (185-222)||(1463872-1463910)
chr5 (185-222)||(3535992-3536029)
chr5 (185-222)||(7147075-7147112)
chr5 (185-222)||(25660914-25660951)
chr5 (185-222)||(31280435-31280472)
chr5 (185-222)||(35813298-35813335)
chr5 (185-218)||(42781650-42781683)
chr5 (185-221)||(17178278-17178314)
chr5 (186-222)||(30119960-30119996)
[»] chr4 (16 HSPs)
chr4 (185-222)||(41492554-41492591)
chr4 (185-222)||(20610741-20610778)
chr4 (185-222)||(27921898-27921935)
chr4 (185-222)||(49039501-49039538)
chr4 (185-222)||(49319395-49319432)
chr4 (185-222)||(54854235-54854272)
chr4 (187-222)||(40261186-40261221)
chr4 (185-222)||(28520787-28520825)
chr4 (185-222)||(53815697-53815735)
chr4 (185-222)||(56916-56953)
chr4 (185-222)||(9062178-9062215)
chr4 (185-222)||(20166318-20166355)
chr4 (185-222)||(38657542-38657579)
chr4 (185-222)||(39293523-39293560)
chr4 (185-222)||(42758219-42758256)
chr4 (185-222)||(49743364-49743401)
[»] chr3 (25 HSPs)
chr3 (185-222)||(38507650-38507687)
chr3 (185-221)||(23237365-23237401)
chr3 (185-222)||(12236601-12236638)
chr3 (185-222)||(16874246-16874283)
chr3 (185-222)||(30745787-30745824)
chr3 (187-222)||(46416281-46416316)
chr3 (185-222)||(3784071-3784109)
chr3 (185-222)||(9624984-9625022)
chr3 (185-222)||(10959134-10959172)
chr3 (185-219)||(12143463-12143497)
chr3 (185-222)||(14868686-14868724)
chr3 (185-222)||(27183737-27183775)
chr3 (185-222)||(47191374-47191412)
chr3 (185-222)||(3973304-3973341)
chr3 (185-222)||(3996535-3996572)
chr3 (185-222)||(4010074-4010111)
chr3 (185-222)||(6951846-6951883)
chr3 (185-222)||(7020776-7020813)
chr3 (185-222)||(19137621-19137658)
chr3 (185-222)||(31108816-31108853)
chr3 (185-214)||(34407146-34407175)
chr3 (185-218)||(36844323-36844356)
chr3 (185-222)||(40160737-40160774)
chr3 (185-218)||(51017796-51017829)
chr3 (185-221)||(51412046-51412082)
[»] chr1 (27 HSPs)
chr1 (185-222)||(9769636-9769673)
chr1 (185-220)||(3341792-3341827)
chr1 (185-222)||(9768865-9768902)
chr1 (185-222)||(18003818-18003855)
chr1 (185-222)||(43020613-43020650)
chr1 (185-221)||(5684125-5684161)
chr1 (185-221)||(16182812-16182848)
chr1 (185-219)||(5862133-5862167)
chr1 (185-222)||(13870137-13870175)
chr1 (185-222)||(25819186-25819224)
chr1 (185-222)||(29491471-29491509)
chr1 (185-219)||(34698100-34698134)
chr1 (185-222)||(39238717-39238755)
chr1 (185-222)||(40678824-40678862)
chr1 (185-222)||(47763441-47763479)
chr1 (185-222)||(195046-195083)
chr1 (185-222)||(2643871-2643908)
chr1 (185-222)||(7015743-7015780)
chr1 (185-222)||(9931089-9931126)
chr1 (185-222)||(11238084-11238121)
chr1 (185-222)||(18179330-18179367)
chr1 (187-220)||(28284008-28284041)
chr1 (185-222)||(42908773-42908810)
chr1 (185-222)||(47645852-47645889)
chr1 (185-222)||(48260245-48260282)
chr1 (185-222)||(51917558-51917595)
chr1 (185-222)||(52961138-52961175)
[»] chr7 (16 HSPs)
chr7 (185-221)||(35195846-35195882)
chr7 (185-222)||(7465468-7465505)
chr7 (185-222)||(17305446-17305483)
chr7 (185-218)||(19924773-19924806)
chr7 (186-219)||(27726426-27726459)
chr7 (185-222)||(32814829-32814866)
chr7 (185-221)||(35498401-35498437)
chr7 (185-222)||(14818421-14818459)
chr7 (185-222)||(15265419-15265457)
chr7 (185-222)||(31475896-31475934)
chr7 (185-222)||(41139088-41139126)
chr7 (185-222)||(3246542-3246579)
chr7 (185-222)||(8147242-8147279)
chr7 (185-222)||(44409203-44409240)
chr7 (185-222)||(48088632-48088669)
chr7 (185-218)||(48174973-48175006)
[»] scaffold0042 (1 HSPs)
scaffold0042 (14-104)||(94125-94213)
[»] chr6 (14 HSPs)
chr6 (185-219)||(6219359-6219393)
chr6 (185-222)||(8309166-8309203)
chr6 (185-222)||(19135931-19135968)
chr6 (185-222)||(34524877-34524914)
chr6 (185-222)||(6143966-6144004)
chr6 (185-219)||(9031771-9031805)
chr6 (185-222)||(9064867-9064905)
chr6 (185-222)||(14981758-14981796)
chr6 (185-222)||(9422835-9422872)
chr6 (185-222)||(14948840-14948877)
chr6 (185-222)||(26669715-26669752)
chr6 (185-222)||(30833019-30833056)
chr6 (185-222)||(32541007-32541044)
chr6 (185-221)||(20858439-20858475)
[»] scaffold0712 (1 HSPs)
scaffold0712 (185-222)||(4522-4559)
[»] scaffold0709 (1 HSPs)
scaffold0709 (185-222)||(4542-4579)
[»] scaffold0168 (1 HSPs)
scaffold0168 (185-222)||(34089-34126)
[»] chr8 (22 HSPs)
chr8 (185-222)||(7345430-7345467)
chr8 (185-221)||(16611588-16611624)
chr8 (185-222)||(2800020-2800058)
chr8 (185-222)||(10292353-10292391)
chr8 (185-222)||(216203-216240)
chr8 (185-222)||(220418-220455)
chr8 (185-222)||(689573-689610)
chr8 (185-222)||(692763-692800)
chr8 (185-222)||(696972-697009)
chr8 (185-222)||(729826-729863)
chr8 (185-222)||(734041-734078)
chr8 (185-222)||(853721-853758)
chr8 (185-222)||(857937-857974)
chr8 (185-218)||(6372659-6372692)
chr8 (185-218)||(11900572-11900605)
chr8 (185-222)||(14011094-14011131)
chr8 (185-222)||(16808417-16808454)
chr8 (185-222)||(20784707-20784744)
chr8 (185-222)||(26657858-26657895)
chr8 (185-222)||(29653056-29653093)
chr8 (185-222)||(39432384-39432421)
chr8 (185-217)||(39208917-39208949)
[»] chr2 (10 HSPs)
chr2 (185-222)||(17896827-17896864)
chr2 (185-222)||(39334937-39334974)
chr2 (185-219)||(32944067-32944101)
chr2 (185-219)||(35352466-35352500)
chr2 (185-222)||(8080726-8080763)
chr2 (185-218)||(25071216-25071249)
chr2 (185-222)||(34107276-34107313)
chr2 (185-222)||(36277758-36277795)
chr2 (185-221)||(6496442-6496478)
chr2 (190-222)||(18089731-18089763)
[»] scaffold0809 (1 HSPs)
scaffold0809 (185-222)||(4861-4899)
[»] scaffold0070 (1 HSPs)
scaffold0070 (185-222)||(12566-12604)
[»] scaffold0036 (1 HSPs)
scaffold0036 (185-222)||(25027-25065)
[»] scaffold0119 (1 HSPs)
scaffold0119 (185-222)||(1041-1078)
[»] scaffold0002 (1 HSPs)
scaffold0002 (185-218)||(440405-440438)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 181 - 420
Target Start/End: Original strand, 31280598 - 31280840
Alignment:
Q  181 gacaatataataatgcatgtccctgccaactgagctatgctcccgatcttgtaatctaaataaagggttttcacgtagatcatattttctttggttcctt 280  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||| || |||    
T  31280598 gacaatataataatgcatgtccctgccaactgagctatgcttccgatcttgtaatctaaataaagagttttcacgtagatcatgtttcctttgatt-ctt 31280696  T
Q  281 ttttcatgttgatttcttcgtctcaattcgacattgtttgactttccat-----tttgttgacctattcgtttccgtttagatcaacacatcaacattga 375  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||     ||||||||| |||| |||| ||||||||||||||||||||||||||    
T  31280697 ttttcatgttgatttcttcgtctcaattctacattgtttgactttccattttaatttgttgacgtatttgttt-cgtttagatcaacacatcaacattga 31280795  T
Q  376 ttagttactgattcaacagatgactatatcatccaggttgcaatt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31280796 ttagttactgattcaacagatgactatatcatccaggttgcaatt 31280840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 31280174 - 31280270
Alignment:
Q  8 cgaagaatatgttctattttccatttgttggaaatactctatattcaatgttttaaaaccgagaccacaggttgaaccaatgagaccttcgactcaa 104  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31280174 cgaagaaaatgctctattttccatttgttgaaaatactctatattcaatgttttaaaatcgagaccacaggttgaaccaatgagaccttcgactcaa 31280270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 31280493 - 31280553
Alignment:
Q  109 aattagtgcaagaaaaaattgaannnnnnnagggggaataaaaatagttatttaaattgaa 169  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  31280493 aattagtgcaagaaaaaattgattttttttagggggaataaaaatagttatttaaattgaa 31280553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 10106669 - 10106632
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  10106669 atataataatggatgtccctgccaactgagctatgctc 10106632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 11246550 - 11246587
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  11246550 atataacaatgcatgtccctgccaactgagctatgctc 11246587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 20186905 - 20186868
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20186905 atataataatgcatgtccctgccaactgagcaatgctc 20186868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 38040305 - 38040268
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38040305 atataacaatgcatgtccctgccaactgagctatgctc 38040268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 1463910 - 1463872
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1463910 atataataatgcattgtccctgccaactgagctatgctc 1463872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 3535992 - 3536029
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  3535992 atataacaatgcatgtccctgccaactgaactatgctc 3536029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 7147075 - 7147112
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||| | |||||||||||||||||    
T  7147075 atataataatgcatgtccttaccaactgagctatgctc 7147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 25660951 - 25660914
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25660951 atataacaatgcatatccctgccaactgagctatgctc 25660914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 31280435 - 31280472
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  31280435 atatagtaatacatgtccctgccaactgagctatgctc 31280472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 35813298 - 35813335
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  35813298 atataacaatgcatgtccctgtcaactgagctatgctc 35813335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 42781650 - 42781683
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    |||||| |||||||||||||||||||||||||||    
T  42781650 atataacaatgcatgtccctgccaactgagctat 42781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 17178278 - 17178314
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||| |||||||||||||| |||||||||||||||    
T  17178278 atataacaatgcatgtccctgtcaactgagctatgct 17178314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 30119996 - 30119960
Alignment:
Q  186 tataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||| || ||||||||||||||||    
T  30119996 tataataatgcatgtccttgtcaactgagctatgctc 30119960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 41492554 - 41492591
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41492554 atataataatgcatgtccctgccaactgagctatgctc 41492591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 20610778 - 20610741
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20610778 atataacaatgcatgtccctgccaactgagctatgctc 20610741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 27921935 - 27921898
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27921935 atataataatgcatgtccctaccaactgagctatgctc 27921898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 49039501 - 49039538
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  49039501 atataacaatgcatgtccctgccaactgagctatgctc 49039538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 49319432 - 49319395
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||| |||||||||||||||||||    
T  49319432 atataataatgcatgtccatgccaactgagctatgctc 49319395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 54854235 - 54854272
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  54854235 atataattatgcatgtccctgccaactgagctatgctc 54854272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 40261221 - 40261186
Alignment:
Q  187 ataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||| |||||||||||||||    
T  40261221 ataataatgcatgtccctgctaactgagctatgctc 40261186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 28520787 - 28520825
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28520787 atataataatgcattgtccctgccaactgagctatgctc 28520825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 53815735 - 53815697
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  53815735 atataataatgcattgtccctgccaactgagctatgctc 53815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 56916 - 56953
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  56916 atataacaatgcatgtccctgccaactgagttatgctc 56953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9062215 - 9062178
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  9062215 atataataatgcatgtccctgccaactaaactatgctc 9062178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 20166355 - 20166318
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  20166355 atataacaatgcatgtccctgccaactgagctacgctc 20166318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 38657579 - 38657542
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  38657579 atataacaatgcatgtccctgccaactgagccatgctc 38657542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 39293560 - 39293523
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  39293560 atataattatgcatgtccctaccaactgagctatgctc 39293523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 42758219 - 42758256
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42758219 atataataatgcatgtccctacaaactgagctatgctc 42758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 49743401 - 49743364
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  49743401 atataataatgcatatccctgccaactgaactatgctc 49743364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 38507687 - 38507650
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38507687 atataataatgcatgtccctgccaactgagctatgctc 38507650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 23237401 - 23237365
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  23237401 atataataatgcatgtccctgccaactgagctatgct 23237365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 12236638 - 12236601
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  12236638 atataataatgcatgtccctgccaactgagctacgctc 12236601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 16874246 - 16874283
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16874246 atataacaatgcatgtccctgccaactgagctatgctc 16874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 30745787 - 30745824
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  30745787 atataacaatgcatgtccctgccaactgagctatgctc 30745824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 46416281 - 46416316
Alignment:
Q  187 ataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  46416281 ataataatgcatgtccttgccaactgagctatgctc 46416316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 3784109 - 3784071
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3784109 atataataatgcattgtccctgccaactgagctatgctc 3784071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9625022 - 9624984
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9625022 atataataatgcattgtccctgccaactgagctatgctc 9624984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 10959172 - 10959134
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10959172 atataataatgcattgtccctgccaactgagctatgctc 10959134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 12143463 - 12143497
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    |||||| ||||||||||||||||||||||||||||    
T  12143463 atataacaatgcatgtccctgccaactgagctatg 12143497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 14868724 - 14868686
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14868724 atataataatgcattgtccctgccaactgagctatgctc 14868686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 27183737 - 27183775
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  27183737 atataataatgcattgtccctgccaactgagctatgctc 27183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 47191412 - 47191374
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  47191412 atataataatgcattgtccctgccaactgagctatgctc 47191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 3973341 - 3973304
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  3973341 atataacaatgcatgtccctaccaactgagctatgctc 3973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 3996535 - 3996572
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  3996535 atataacaatgcatgtccctaccaactgagctatgctc 3996572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 4010074 - 4010111
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  4010074 atataacaatgcatgtccctaccaactgagctatgctc 4010111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 6951846 - 6951883
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  6951846 atataataatgcatgtccctgtcaactgagttatgctc 6951883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7020813 - 7020776
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  7020813 atataataatgcatgtctctgccaactgatctatgctc 7020776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 19137658 - 19137621
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  19137658 atataacaatgcatgttcctgccaactgagctatgctc 19137621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 31108816 - 31108853
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  31108816 atataattatgcatgtccctgccaactgagttatgctc 31108853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 34407146 - 34407175
Alignment:
Q  185 atataataatgcatgtccctgccaactgag 214  Q
    ||||||||||||||||||||||||||||||    
T  34407146 atataataatgcatgtccctgccaactgag 34407175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 36844356 - 36844323
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    ||||||||||| ||||||||||||||||||||||    
T  36844356 atataataatgtatgtccctgccaactgagctat 36844323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 40160774 - 40160737
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  40160774 atataacaatgcatgtccctgccaattgagctatgctc 40160737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 51017829 - 51017796
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    |||||| |||||||||||||||||||||||||||    
T  51017829 atataacaatgcatgtccctgccaactgagctat 51017796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 51412046 - 51412082
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||| |||||||||||||||||||||| |||||||    
T  51412046 atataacaatgcatgtccctgccaactgaactatgct 51412082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 9769636 - 9769673
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9769636 atataataatgcatgtccctgccaactgagctatgctc 9769673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 3341792 - 3341827
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgc 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  3341792 atataataatgcatgtccctgccaactgagctatgc 3341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 9768865 - 9768902
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9768865 atataacaatgcatgtccctgccaactgagctatgctc 9768902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 18003855 - 18003818
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18003855 atataacaatgcatgtccctgccaactgagctatgctc 18003818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 43020650 - 43020613
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43020650 atataataatgcatgtccctgccaaccgagctatgctc 43020613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 5684161 - 5684125
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5684161 atataataatgcatgtctctgccaactgagctatgct 5684125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 16182848 - 16182812
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16182848 atataataatgcatgtctctgccaactgagctatgct 16182812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 5862167 - 5862133
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    |||||| ||||||||||||||||||||||||||||    
T  5862167 atataacaatgcatgtccctgccaactgagctatg 5862133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 13870137 - 13870175
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13870137 atataataatgcattgtccctgccaactgagctatgctc 13870175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 25819224 - 25819186
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25819224 atataataatgcattgtccctgccaactgagctatgctc 25819186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 29491509 - 29491471
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29491509 atataataatgcattgtccctgccaactgagctatgctc 29491471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 34698134 - 34698100
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    ||||||||||||||||||||| |||||||||||||    
T  34698134 atataataatgcatgtccctgtcaactgagctatg 34698100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 39238755 - 39238717
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39238755 atataataatgcattgtccctgccaactgagctatgctc 39238717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 40678862 - 40678824
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40678862 atataataatgcattgtccctgccaactgagctatgctc 40678824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 47763441 - 47763479
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  47763441 atataataatgcattgtccctgccaactgagctatgctc 47763479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 195083 - 195046
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  195083 atataattatgcatgtccctgccaactgagctacgctc 195046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 2643871 - 2643908
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  2643871 atataataatgcatgtctctgccaactaagctatgctc 2643908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 7015743 - 7015780
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  7015743 atataacaatgcatgtcccagccaactgagctatgctc 7015780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9931126 - 9931089
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  9931126 atataataatgcatgtccctgctaactgagttatgctc 9931089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 11238084 - 11238121
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  11238084 atataataatgcatgtccatgccatctgagctatgctc 11238121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 18179367 - 18179330
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  18179367 atataacaatgcatgtccctgccaactgagttatgctc 18179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 28284008 - 28284041
Alignment:
Q  187 ataataatgcatgtccctgccaactgagctatgc 220  Q
    ||||||||||||||| ||||||||||||||||||    
T  28284008 ataataatgcatgtctctgccaactgagctatgc 28284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 42908810 - 42908773
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  42908810 atataacaatgcatgtccctgccaactgagctaagctc 42908773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 47645852 - 47645889
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  47645852 atataacaatgcatgtctctgccaactgagctatgctc 47645889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 48260245 - 48260282
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||  |||||||||||||||||||||||    
T  48260245 atataataatgcacatccctgccaactgagctatgctc 48260282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 51917558 - 51917595
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||  |||||||||||||||||||    
T  51917558 atataataatgcatgtctatgccaactgagctatgctc 51917595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 52961138 - 52961175
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  52961138 atataacaatgcatgtccttgccaactgagctatgctc 52961175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 35195882 - 35195846
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  35195882 atataataatgcatgtccctgccaactgagctatgct 35195846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7465505 - 7465468
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7465505 atataataatgcatgtctctgccaactgagctatgctc 7465468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 17305446 - 17305483
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  17305446 atataacaatgcatgtccctgccaactgagctatgctc 17305483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 19924806 - 19924773
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    ||||||||||||||||||||||||||||||||||    
T  19924806 atataataatgcatgtccctgccaactgagctat 19924773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 27726426 - 27726459
Alignment:
Q  186 tataataatgcatgtccctgccaactgagctatg 219  Q
    ||||||||||||||||||||||||||||||||||    
T  27726426 tataataatgcatgtccctgccaactgagctatg 27726459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 32814866 - 32814829
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||| |||||||||||||||||    
T  32814866 atataataatgcatgtccctaccaactgagctatgctc 32814829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 35498437 - 35498401
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35498437 atataataatgcatgtccctgccaactgagttatgct 35498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 14818421 - 14818459
Alignment:
Q  185 atataataatgca-tgtccctgccaactgagctatgctc 222  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  14818421 atataataatgcactgtccctgccaactgagctatgctc 14818459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 15265419 - 15265457
Alignment:
Q  185 atataataatgca-tgtccctgccaactgagctatgctc 222  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  15265419 atataataatgcactgtccctgccaactgagctatgctc 15265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 31475896 - 31475934
Alignment:
Q  185 atataataatgca-tgtccctgccaactgagctatgctc 222  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  31475896 atataataatgcaatgtccctgccaactgagctatgctc 31475934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 41139126 - 41139088
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41139126 atataataatgcattgtccctgccaactgagctatgctc 41139088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 3246542 - 3246579
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  3246542 atataacaatgcatgtccctgtcaactgagctatgctc 3246579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 8147242 - 8147279
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  8147242 atataacaatgcatgtccctgccaattgagctatgctc 8147279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 44409240 - 44409203
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  44409240 atataataatgcatgtccctgctaactgagttatgctc 44409203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 48088669 - 48088632
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  48088669 atataataatgtatgttcctgccaactgagctatgctc 48088632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 48175006 - 48174973
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    |||||||||||||||||| |||||||||||||||    
T  48175006 atataataatgcatgtccttgccaactgagctat 48174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 94125 - 94213
Alignment:
Q  14 atatgttctattttccatttgttggaaatactctatattcaatgttttaaaaccgagaccacaggttgaaccaatgagaccttcgactcaa 104  Q
    ||||||| |||||| ||| ||||| |||| || |||||||||||||||||||  |||||   |||||||||||| ||||||||||| ||||    
T  94125 atatgttatatttttcatatgttgaaaatgctatatattcaatgttttaaaa--gagacaggaggttgaaccaacgagaccttcgattcaa 94213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 6219393 - 6219359
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    |||||||||||||||||||||||||||||||||||    
T  6219393 atataataatgcatgtccctgccaactgagctatg 6219359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 8309203 - 8309166
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  8309203 atataacaatgcatgtccctgccaactgagctatgctc 8309166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 19135968 - 19135931
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19135968 atataataatgcatgtccctgccaaccgagctatgctc 19135931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 34524914 - 34524877
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34524914 atataacaatgcatgtccctgccaactgagctatgctc 34524877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 6144004 - 6143966
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6144004 atataataatgcattgtccctgccaactgagctatgctc 6143966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 9031805 - 9031771
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    |||||| ||||||||||||||||||||||||||||    
T  9031805 atataacaatgcatgtccctgccaactgagctatg 9031771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9064905 - 9064867
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9064905 atataataatgcattgtccctgccaactgagctatgctc 9064867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 14981758 - 14981796
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14981758 atataataatgcattgtccctgccaactgagctatgctc 14981796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9422872 - 9422835
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  9422872 atataacaatgcatgtccctgccaactgagttatgctc 9422835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 14948840 - 14948877
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  14948840 atataataatgtatgtccctgtcaactgagctatgctc 14948877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 26669715 - 26669752
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  26669715 atataattatgcatgtccctaccaactgagctatgctc 26669752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 30833056 - 30833019
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  30833056 atataacaatgcatgtccctgccaactgaactatgctc 30833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 32541007 - 32541044
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  32541007 atataataatgcatgtctctgccaactgaactatgctc 32541044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 20858439 - 20858475
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  20858439 atataacaatgcatgtccctgccaactgagttatgct 20858475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 4559 - 4522
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4559 atataacaatgcatgtccctgccaactgagctatgctc 4522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 4579 - 4542
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4579 atataacaatgcatgtccctgccaactgagctatgctc 4542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 34089 - 34126
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34089 atataacaatgcatgtccctgccaactgagctatgctc 34126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7345467 - 7345430
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7345467 atataataatgcatgtccctgccaactgagttatgctc 7345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 16611624 - 16611588
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16611624 atataataatgcatgtccctgccaactgatctatgct 16611588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 2800058 - 2800020
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2800058 atataataatgcattgtccctgccaactgagctatgctc 2800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 10292391 - 10292353
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10292391 atataataatgcattgtccctgccaactgagctatgctc 10292353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 216203 - 216240
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  216203 atataacaatgtatgtccctgccaactgagctatgctc 216240  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 220418 - 220455
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| | |||||||||||||||||||||||||||||    
T  220418 atataacattgcatgtccctgccaactgagctatgctc 220455  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 689573 - 689610
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| | |||||||||||||||||||||||||||||    
T  689573 atataacattgcatgtccctgccaactgagctatgctc 689610  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 692763 - 692800
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  692763 atataacaatgtatgtccctgccaactgagctatgctc 692800  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 696972 - 697009
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  696972 atataacaatgtatgtccctgccaactgagctatgctc 697009  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 729826 - 729863
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  729826 atataacaatgtatgtccctgccaactgagctatgctc 729863  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 734041 - 734078
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| | |||||||||||||||||||||||||||||    
T  734041 atataacattgcatgtccctgccaactgagctatgctc 734078  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 853721 - 853758
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  853721 atataacaatgtatgtccctgccaactgagctatgctc 853758  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 857937 - 857974
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| | |||||||||||||||||||||||||||||    
T  857937 atataacattgcatgtccctgccaactgagctatgctc 857974  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 6372659 - 6372692
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    ||||||| ||||||||||||||||||||||||||    
T  6372659 atataattatgcatgtccctgccaactgagctat 6372692  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 11900605 - 11900572
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    |||||||||||||||| |||||||||||||||||    
T  11900605 atataataatgcatgttcctgccaactgagctat 11900572  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 14011094 - 14011131
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  14011094 atataacaatgcatgtccctgccaactgaactatgctc 14011131  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 16808417 - 16808454
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  16808417 atataataatgcatgtccctgctaactgagttatgctc 16808454  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 20784707 - 20784744
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  20784707 atataataatgcatgttcctgccaactgaactatgctc 20784744  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 26657895 - 26657858
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  26657895 atataacaatgcatgtccctaccaactgagctatgctc 26657858  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 29653093 - 29653056
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  29653093 atataataatgcatgtccctgccaattgaactatgctc 29653056  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 39432384 - 39432421
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| | |||||||||||||||||||||||||||||    
T  39432384 atataacattgcatgtccctgccaactgagctatgctc 39432421  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 39208917 - 39208949
Alignment:
Q  185 atataataatgcatgtccctgccaactgagcta 217  Q
    |||||||||||||||||||||| ||||||||||    
T  39208917 atataataatgcatgtccctgcaaactgagcta 39208949  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 17896864 - 17896827
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17896864 atataattatgcatgtccctgccaactgagctatgctc 17896827  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 39334937 - 39334974
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||||||||||||| |||||||    
T  39334937 atataataatgcatgtccctgccaactgagttatgctc 39334974  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 32944101 - 32944067
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    |||||||||||||||||| ||||||||||||||||    
T  32944101 atataataatgcatgtccatgccaactgagctatg 32944067  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 35352466 - 35352500
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatg 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  35352466 atataattatgcatgtccctgccaactgagctatg 35352500  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 8080726 - 8080763
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  8080726 atataataatgcatgtccctaccaattgagctatgctc 8080763  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 25071249 - 25071216
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    ||||||||||||||||||||||||| ||||||||    
T  25071249 atataataatgcatgtccctgccaattgagctat 25071216  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 34107313 - 34107276
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| || |||||||||||||||||||||||||||    
T  34107313 atataattatacatgtccctgccaactgagctatgctc 34107276  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 36277758 - 36277795
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  36277758 atataacaatgcatgtcactgccaactgagctatgctc 36277795  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 6496478 - 6496442
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgct 221  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  6496478 atataacaatgcatgtcccttccaactgagctatgct 6496442  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 18089763 - 18089731
Alignment:
Q  190 ataatgcatgtccctgccaactgagctatgctc 222  Q
    |||||||||||| ||||||||||||||||||||    
T  18089763 ataatgcatgtctctgccaactgagctatgctc 18089731  T

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Target: scaffold0809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 4861 - 4899
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4861 atataataatgcattgtccctgccaactgagctatgctc 4899  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 12604 - 12566
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  12604 atataataatgcattgtccctgccaactgagctatgctc 12566  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 25065 - 25027
Alignment:
Q  185 atataataatgcat-gtccctgccaactgagctatgctc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25065 atataataatgcattgtccctgccaactgagctatgctc 25027  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 1078 - 1041
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctatgctc 222  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  1078 atataattatgcatgtccctaccaactgagctatgctc 1041  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 440438 - 440405
Alignment:
Q  185 atataataatgcatgtccctgccaactgagctat 218  Q
    |||||||||||||||| |||||||||||||||||    
T  440438 atataataatgcatgttcctgccaactgagctat 440405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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