View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_32 (Length: 398)
Name: NF18982_high_32
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 1249204 - 1248829
Alignment:
| Q |
6 |
aggagcacagagctggttgtggcttacatctaggcctacaagcttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagc |
105 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1249204 |
aggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaagc |
1249105 |
T |
|
| Q |
106 |
cctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249104 |
cctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
1249005 |
T |
|
| Q |
206 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgac |
305 |
Q |
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| T |
1249004 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgac |
1248905 |
T |
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| Q |
306 |
gaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataagact |
381 |
Q |
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| T |
1248904 |
gaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataagact |
1248829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 49 - 381
Target Start/End: Original strand, 12079465 - 12079797
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
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| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
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| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatgg |
12079764 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcataagact |
381 |
Q |
| |
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|| || ||||||||||||||||||||| ||||| |
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| T |
12079765 |
atggttgtttttgggattttcttgcatgagact |
12079797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 49 - 381
Target Start/End: Original strand, 12096105 - 12096437
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| ||| |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
|
| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
| |
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|| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || |||||||| || || ||||| |||||||||||||| | | |
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| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatgg |
12096404 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcataagact |
381 |
Q |
| |
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|| || ||||||||||||||||||||| ||||| |
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| T |
12096405 |
atggttgtttttgggattttcttgcatgagact |
12096437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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