View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_high_34 (Length: 383)
Name: NF18982_high_34
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_34 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 29331701 - 29331319
Alignment:
| Q |
1 |
acaaggttctgagtgtatacaatgtcagacaatgattttcattactatttttacccatttcgtgcatttcaagttagtgatgatgctaataatttcattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29331701 |
acaaggttctgagtgtatacaatgtcagacaatgattttcattactatttttacccattccgtgcatttcaagttagtgatgatgctaataatttcattc |
29331602 |
T |
|
| Q |
101 |
atatatgattctctcttccatttcgctaccgcaggacatgatgctatactttaacgaagttgcgatactggtccttaagtcactggatgagccgaaccac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29331601 |
atatatgattctctcttccattttgctaccacaggacatgatgctatactttaacgaagttgcgatactggtccttaagtcactggatgagccgaaccac |
29331502 |
T |
|
| Q |
201 |
cgagtactttgggctactatgcatgcagttaagtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcacaagaagttcttggagaaactag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29331501 |
cgagtactttgggctactatgcatgcagttaagtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcacaagaagttcttggagaaactag |
29331402 |
T |
|
| Q |
301 |
ttcctgtcatcaggtgtaattcttgtgcccgtgtgcaggtacaaacatattaatgctacaacttgatatctgttaatgtaaag |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29331401 |
ttcctgtcatcaggtgtaattcttgtgcccgtgtgcaggtacaaacatattaatgctacaacttgatatcttttaatgtaaag |
29331319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 83 - 357
Target Start/End: Complemental strand, 29320656 - 29320382
Alignment:
| Q |
83 |
atgctaataatttcattcatatatgattctctcttccatttcgctaccgcaggacatgatgctatactttaacgaagttgcgatactggtccttaagtca |
182 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
29320656 |
atgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtca |
29320557 |
T |
|
| Q |
183 |
ctggatgagccgaaccaccgagtactttgggctactatg-catgcagttaagtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcacaag |
281 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||| || | || ||| |||||||||| |||||||||| |||| | ||||||||||||| |
|
|
| T |
29320556 |
ctggatgatttggaccctcgagtactttgggctactatgccaacaatttcagt-tttgagtgaacataaggaactactaattcaggatcaatatcacaag |
29320458 |
T |
|
| Q |
282 |
aagttcttggagaaactagttcctgtcatcaggtgtaattcttgtgcccgtgtgcaggtacaaacatattaatgct |
357 |
Q |
| |
|
||||| ||||||||||||||||| |||| || ||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
29320457 |
aagtttttggagaaactagttcccatcattagatgtaactcttgtgcccgtgtacaggtacagacatattaatgct |
29320382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 304
Target Start/End: Complemental strand, 29303268 - 29303046
Alignment:
| Q |
81 |
tgatgctaataatttcattcatatatgattctctcttccatttcgctaccgcaggacatgatgctatactttaacgaagttgcgatactggtccttaagt |
180 |
Q |
| |
|
||||||| | ||||| ||| |||||||||||| |||||| ||| | ||| ||||||||||| | |||||| || ||||||| | ||||||||||||| |
|
|
| T |
29303268 |
tgatgcttacaatttaatttatatatgattctttcttccttttgg-tactacaggacatgatacagtactttgaccaagttgcaagtctggtccttaagt |
29303170 |
T |
|
| Q |
181 |
cactggatgagccgaaccaccgagtactttgggctactatgcatgcagttaagtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcacaa |
280 |
Q |
| |
|
||| ||||| | ||||| ||| |||||||||||||| ||||| ||| |||| || |||||||||| |||||| | |||||||| | || |||||||| |
|
|
| T |
29303169 |
tacttgatgatctgaacccccgtgtactttgggctaccatgcaagcaattaattgcttgagtgaatataaggatcaattaatgcttgctgaatatcactt |
29303070 |
T |
|
| Q |
281 |
gaagttcttggagaaactagttcc |
304 |
Q |
| |
|
|||||| |||| ||||||||||| |
|
|
| T |
29303069 |
gaagtttttggctaaactagttcc |
29303046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 29294554 - 29294476
Alignment:
| Q |
200 |
ccgagtactttgggctactatgcatgcagttaagtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| | |||||||| |||| |
|
|
| T |
29294554 |
ccgagtactttgggctactatgcatgcaattaagtgtttgagtgaatacaaggaaatattaaaggattctcaatttcac |
29294476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 42284280 - 42284328
Alignment:
| Q |
233 |
gtgtttgagtgaatgtaaggaactattaatgcgttctcaatatcacaag |
281 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42284280 |
gtgtttgagtgaatgtaaggaactattactgcgttctcaatatctcaag |
42284328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University