View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_37 (Length: 372)
Name: NF18982_high_37
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 2503465 - 2503287
Alignment:
| Q |
22 |
ttgatatcgatgaagctatgaagcaaagaattccagctaccaccaaagggactgagatttgcaactgtgattcatggaatccttgtgtaacattttttag |
121 |
Q |
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| T |
2503465 |
ttgatatcgatgaagctatgaagcaaagaattccagctaccaccaaagggactgagatttgcaactgtgattcatggaatccttgtgtaacattttttag |
2503366 |
T |
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| Q |
122 |
ctgagaaattttgtctagaacatggttaatattgagtatagttgaaaagggctttgtttgttttgcatttgaaggattg |
200 |
Q |
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| T |
2503365 |
ctgagaaattttgtctagaacatggttaatattgagtatagttgaaaagggctttgtttgttttgcatttgaaggattg |
2503287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 2503257 - 2503132
Alignment:
| Q |
230 |
tataatactttcagttctcattttgcttttgagagaattttagcaatgataaagagtgaagtagtgaggttaggtgtgtatatgctgattggcacactat |
329 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503257 |
tataatacttttagttctcattttgcttttgagagaattttagcaatgataaagagtgaagtagtgaggttaggtgtgtatatgctgattggcacactat |
2503158 |
T |
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| Q |
330 |
aatggctttaatatatagggacattg |
355 |
Q |
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| T |
2503157 |
aatggctttaatatatagggacattg |
2503132 |
T |
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