View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_45 (Length: 345)

Name: NF18982_high_45
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_45
NF18982_high_45
[»] chr6 (2 HSPs)
chr6 (1-335)||(13077662-13077996)
chr6 (1-335)||(13073458-13073792)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13077662 - 13077996
Alignment:
Q  1 cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077662 cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa 13077761  T
Q  101 attgtttcttctagtacctgaatgtgctttttcccctcaacnnnnnnnnnnnnnnnnnnnncaactgtaattggtggttcaacatccatcttaggagcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||| ||    
T  13077762 attgtttcttctagtacctgaatgtgctttttcccctcaactttttttatttgagttttttcaactgtaattggtggttcaacatccatcttaggagtga 13077861  T
Q  201 cttgttctgattctctttgatatcctctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077862 cttgttctgattctctttgatatcgtctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc 13077961  T
Q  301 cattattttaggcttcttttcttctgtggtctgtg 335  Q
    |||||||||||||||||||||||||||||| ||||    
T  13077962 cattattttaggcttcttttcttctgtggtttgtg 13077996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13073458 - 13073792
Alignment:
Q  1 cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073458 cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa 13073557  T
Q  101 attgtttcttctagtacctgaatgtgctttttcccctcaacnnnnnnnnnnnnnnnnnnnncaactgtaattggtggttcaacatccatcttaggagcga 200  Q
    ||||||||||||||||||||||||||||||| |||||||||                    ||| |||||||||||||||||||| ||||||||||| ||    
T  13073558 attgtttcttctagtacctgaatgtgcttttacccctcaactttttttatttgagttttttcaaatgtaattggtggttcaacatacatcttaggagaga 13073657  T
Q  201 cttgttctgattctctttgatatcctctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc 300  Q
    |||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073658 cttgttatgattctctttaatatcatctcttagaagcctctagcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc 13073757  T
Q  301 cattattttaggcttcttttcttctgtggtctgtg 335  Q
    |||||||||||||||||||||||||||||| ||||    
T  13073758 cattattttaggcttcttttcttctgtggtttgtg 13073792  T

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