View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_48 (Length: 334)
Name: NF18982_high_48
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 11859546 - 11859243
Alignment:
| Q |
19 |
tgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggca |
118 |
Q |
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| T |
11859546 |
tgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggca |
11859447 |
T |
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| Q |
119 |
acatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct |
218 |
Q |
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| T |
11859446 |
acatggctgcttcgtgttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattct |
11859347 |
T |
|
| Q |
219 |
taatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtg |
318 |
Q |
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| T |
11859346 |
caatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtg |
11859247 |
T |
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| Q |
319 |
atga |
322 |
Q |
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|||| |
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| T |
11859246 |
atga |
11859243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 11827405 - 11827171
Alignment:
| Q |
19 |
tgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggca |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| | ||| | |||| | |||||| |
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| T |
11827405 |
tgaagtaattggtccataaatctgctgaaacaatgaccaagattccttttgattaagcccctgcaacttcaaaacatatgtagcaccaatattgttggcg |
11827306 |
T |
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| Q |
119 |
acatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatca---t |
215 |
Q |
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| T |
11827305 |
acatggttgctac---atgtggtaatgagtatcacggtattggtacggccaccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgct |
11827209 |
T |
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| Q |
216 |
tcttaatctcaattcgcaaatcatctataacaagtaag |
253 |
Q |
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| T |
11827208 |
tattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 312
Target Start/End: Complemental strand, 12038317 - 12038039
Alignment:
| Q |
31 |
tccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgctt |
130 |
Q |
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||||||||| | || |||||| |||||||| ||||| ||||||||| ||| ||| ||||||||| ||| || |||||||| || ||| |||||||| || |
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| T |
12038317 |
tccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttacta |
12038218 |
T |
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| Q |
131 |
cgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaa |
227 |
Q |
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||||| || || ||||| || ||||||| | || ||| |||| || ||||||||||||||||||||| |||| |||| || ||||||||| |
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| T |
12038217 |
cgtgtagt---aatgagtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaa |
12038121 |
T |
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| Q |
228 |
ttcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaa |
312 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||| |||| || | ||||| |||| |||| |||||||||||||| |
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| T |
12038120 |
atctcaaatcatctataacaagtaagaggcgtttctcatgatgagac---tcggcaacactttttgctatagattcaacatcaaa |
12038039 |
T |
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