View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_high_50 (Length: 326)
Name: NF18982_high_50
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 8932962 - 8932653
Alignment:
| Q |
1 |
atgaacgaatctgaatttgattttgttcaggaaaaatactatttagctagagaaaagtatgaacaagcagttgtgattaaacctgatttttatgagggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8932962 |
atgaacgaatctgaatttgattttgttcaggaaaaatactatttagctagagaaaagtatgaacaagcagttgtgattaaacctgatttttatgagggat |
8932863 |
T |
|
| Q |
101 |
tattagctattggacaacaacaatttgaattggctaagcttaattggtcttttgggatagctaataagatggatttaggtaaagaaacgcttcggctttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8932862 |
tattagctattggacaacaacaatttgaattggctaagcttaattggtcttttgggatagctaataagatggatttaggtaaagaaacacttcggctttt |
8932763 |
T |
|
| Q |
201 |
tgatgttgcggaggagaagatgacagccgcgaatgatgcgtgggagaacttggaaaaaggaaaacttggtgagcaaggaagtgttggtatgagatcacag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8932762 |
tgatgttgcggaggagaagatgacagccgcgaatgatgcgtgggagaacttggaaaaaggaaaacttggtgagcaaggaagtgttggtatgagatcacag |
8932663 |
T |
|
| Q |
301 |
attcatcttt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
8932662 |
attcatcttt |
8932653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 55533521 - 55533441
Alignment:
| Q |
74 |
tgattaaacctgatttttatgagggattattagctattggacaacaacaatttgaattggctaagcttaattggtcttttg |
154 |
Q |
| |
|
|||| ||||||||||| ||||||||| | || ||| | || ||||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
55533521 |
tgatcaaacctgatttctatgagggactgttggctctgggccaacaacaatttgaaatggccaagctccattggtcttttg |
55533441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University