View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_57 (Length: 311)
Name: NF18982_high_57
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 1135966 - 1136246
Alignment:
| Q |
17 |
ccatccttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaacca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1135966 |
ccatccttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaacca |
1136065 |
T |
|
| Q |
117 |
atatttctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136066 |
atatttctatcaaacaaaattgtccggcta---ctcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaa |
1136162 |
T |
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| Q |
217 |
cgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136163 |
cgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
1136246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 1139174 - 1139457
Alignment:
| Q |
17 |
ccatccttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaacca |
116 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1139174 |
ccatcctttagcctcaatccaccacctgatttttcacattctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaacca |
1139273 |
T |
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| Q |
117 |
atatttctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaa |
216 |
Q |
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| T |
1139274 |
atatttctatcaaacaaaattgttcggctattactcataaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaa |
1139373 |
T |
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| Q |
217 |
cgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139374 |
tgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
1139457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 54479554 - 54479286
Alignment:
| Q |
17 |
ccatccttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaacca |
116 |
Q |
| |
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|||||||| ||| ||||||||||||||| | |||| |||||||||||||||||| || |||||| ||||| ||| ||| |||||||||| | |
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| T |
54479554 |
ccatcctttagcttcaatccaccacctcgtgtttctcattctcctccaatattatcatacaacatttcaaa---------tgagcattataaccaaacaa |
54479464 |
T |
|
| Q |
117 |
atatttctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaa |
216 |
Q |
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|||||||||||||| || |||| || | ||||| |||||||||||||| |||| ||| |||| || || |||||||||| |||||||||||||||||| |
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| T |
54479463 |
atatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctatgcatgacatgaa |
54479364 |
T |
|
| Q |
217 |
cgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgc |
294 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54479363 |
tgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggttgc |
54479286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 31269290 - 31269152
Alignment:
| Q |
159 |
ttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggctcctatgat |
258 |
Q |
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||||||||||||| ||||| ||||| || |||||||| | |||||||||||| ||||| || || |||||||||||||||||||| || ||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
|
| Q |
259 |
tcataaaactccatttaaacaaacaccaaaggttgcatt |
297 |
Q |
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||||||| ||||||| ||||||| ||||||||||||||| |
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| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggttgcatt |
31269152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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