View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_6 (Length: 658)
Name: NF18982_high_6
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 5 - 637
Target Start/End: Original strand, 4573253 - 4573876
Alignment:
| Q |
5 |
tgtcgaagaatatgtaggatgagattaatctagaccaatgtctaacacaagcaatcaaaaatggaagcaccaataaataaagaattagcatgcactgtca |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4573253 |
tgtcaaagaatatgtaggatgagattaatctagaccaatgtctaacacaagcaatcaaaaatggaagcaccaataaataaagaattagcatgcactgtca |
4573352 |
T |
|
| Q |
105 |
ttttatgcagtctaacatttcctatggattgtaatatcgggggtacggtatgttgattatcggattttagaagttaaaaaacaaagaatccaatctttat |
204 |
Q |
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| T |
4573353 |
ttttatgcagtctaacatttcctatggattgtaatatcgggcgtacggtatgttgattatcggattttagaagttaaaaaacaaagaatccaatctctat |
4573452 |
T |
|
| Q |
205 |
ttagcaattgacatttaccaactgcagcattttgtgactgcaatcgatttggaccgataatattgagatgtgtcttgaaatcatatgttgaaagtcggag |
304 |
Q |
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| T |
4573453 |
ttagcaattgacatttaccaactgcagcattttgtgactgcaatcgatttggaccgataatattgagatgtgtcttgaaatcatatgttgaatgtcggag |
4573552 |
T |
|
| Q |
305 |
aaatatgacggcgttttgtcccatgctctaggcgtagggactgctgcgctaggtgcggctgtgttgatgtttc---aagatctgtttctaccagctgcgc |
401 |
Q |
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| T |
4573553 |
aaatatgacggcgttttgtcc-----------cgtagggactgctgcgctaggtgcggctgtgttgatgtttcaagaagatctgtttctacaagctgcgc |
4573641 |
T |
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| Q |
402 |
tagacacatgagcaagctgcgtgaaacgcatagatttatgtggagctacactgggtgcagaggataatcttgggatccgaattttcagcttttagagtgt |
501 |
Q |
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| T |
4573642 |
tagacacacgagcaagctgcgtgaaacgcatagatttatgtggagctacactgggtgcagaggataatcctgggatccgaattttcagcttttagagtgt |
4573741 |
T |
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| Q |
502 |
gtaaaaggtcaaaacttgttctctatggctaatttaatgaaaccaaataaagtgatcgttagaaaaaggtattctctaagggttgatatcttttgtttgg |
601 |
Q |
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| T |
4573742 |
gtaaaaggtcaaaacttgttctctatggctaatttaatgaaaccaaataaagtgatcgttag-aaaagatattctctaagggttgatgtcttttgtgtgg |
4573840 |
T |
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| Q |
602 |
gattagtggcttggaaaacacgtgatagtgtgagag |
637 |
Q |
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| T |
4573841 |
gattagtggcttggaaaacacgtgatagtgtgagag |
4573876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4592224 - 4592264
Alignment:
| Q |
5 |
tgtcgaagaatatgtaggatgagattaatctagaccaatgt |
45 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||| |
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| T |
4592224 |
tgtcaaagaatatgtagaatgagattaatctagaccaatgt |
4592264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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