View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_60 (Length: 303)
Name: NF18982_high_60
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 127 - 288
Target Start/End: Original strand, 8933339 - 8933500
Alignment:
| Q |
127 |
aacaaaggtggttcatgttcgggactaacttcgacgatatatagtttcagaattccaactgaatcggttttatatacgcaagattcggcaaatctgagtt |
226 |
Q |
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| T |
8933339 |
aacaaaggtggttcgtgttcgggactaacttcgacgatatatagtttcagaatttcaactgaatcggttttatatacgcaagattcggcgaatctgagtt |
8933438 |
T |
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| Q |
227 |
cttccgtggaggttatagtcacaagatcatcgtcattatctttgtactttatcaaaactgat |
288 |
Q |
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| T |
8933439 |
cttccgtggaggttatagtcacaagatcatcgtcattatctttgtactttatcaaaactgat |
8933500 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8933224 - 8933298
Alignment:
| Q |
12 |
atcatcaatctctagattctctactactttattgcattcaatacacattttctcatccaagacacaatctagagg |
86 |
Q |
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| T |
8933224 |
atcatcaatctctagattctctactactttattgcattcagtacacattttctcatccaagacacaatctagagg |
8933298 |
T |
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