View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_62 (Length: 295)
Name: NF18982_high_62
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 102 - 276
Target Start/End: Original strand, 36967165 - 36967339
Alignment:
| Q |
102 |
atatacaatcacaataataatgattgtactaacggttattttctccggtttgcaattcatccggttcatgtttctgagaagaactgcttctccaaaaacc |
201 |
Q |
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| T |
36967165 |
atatacaatcacaataataatgattgtactaacggttattttctccggtttgcaattcatccggttcatgtttctgagaagaactgcttctccaaaaacc |
36967264 |
T |
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| Q |
202 |
gtttacgctgaaccgggcccataaatcctcctccggcaattcctcctgggccaaaagctcctccatcgtgggccc |
276 |
Q |
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| T |
36967265 |
gtttacgctgaaccgggcccataaatcctcctccggcaattcctcctgggccaaaagctcctccatcgtgggccc |
36967339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 36967042 - 36967150
Alignment:
| Q |
11 |
cacagaccagaaaaggtaaacaaagcattgaattctttttggatttcaacacctgtatcttcaatctcaaatgtaaaaatcacattatacaatatacaat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36967042 |
cacacaccagaaaaggtaaacaaagcattgaattctttttggatttcaacacctgtatcttcaatctcaaatgtaaaaatcacattatacaatatacaat |
36967141 |
T |
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| Q |
111 |
cacaataat |
119 |
Q |
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| T |
36967142 |
cacaataat |
36967150 |
T |
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