View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_64 (Length: 292)
Name: NF18982_high_64
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 11399281 - 11399038
Alignment:
| Q |
12 |
atgaatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaaagtgaacattacaataat |
111 |
Q |
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| T |
11399281 |
atgaatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaaagtgaacattacaataat |
11399182 |
T |
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| Q |
112 |
ttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaacttccaaaacagttgctaacaaatctaactgttttaactaacttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399181 |
ttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaacttccaaaacagttgctaacaaatctaactgttttaactaacttg |
11399082 |
T |
|
| Q |
212 |
aattaaaatacaacagtttttgatggtgagaagcgttgcatcca |
255 |
Q |
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| T |
11399081 |
aattaaaatacaacagttttttatcgtgagaagctttgcatcca |
11399038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 36612830 - 36612695
Alignment:
| Q |
89 |
tgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaacttccaaaacagttgctaacaa |
188 |
Q |
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| T |
36612830 |
tgaaaagtgaacactataatcatttataccaagcatgtgtaactaact-gtaaagcaagcaaccgctct-ctaaccaacttctaaaacagttgacaacaa |
36612733 |
T |
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| Q |
189 |
atctaactgttttaactaacttgaattaaaatacaaca |
226 |
Q |
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| T |
36612732 |
acctaactgttttaactaacttaaattaaaatacaaca |
36612695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 36614047 - 36614006
Alignment:
| Q |
35 |
agagagaaaagagatagatacaaatgattgtaattctatatt |
76 |
Q |
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| T |
36614047 |
agagagaaaagagatagatgcaatggattgtaattctatatt |
36614006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 30915356 - 30915288
Alignment:
| Q |
25 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
93 |
Q |
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| T |
30915356 |
agagaaattgagagagataagagatatatgcaatagattgtaattctatattctcattagtgaatgaaa |
30915288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 30904543 - 30904475
Alignment:
| Q |
25 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
93 |
Q |
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| T |
30904543 |
agagaaattgagagagagaagagatatatgcaatagattgtaattctatattctcattaatgaatgaaa |
30904475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 43695224 - 43695266
Alignment:
| Q |
184 |
aacaaatctaactgttttaactaacttgaattaaaatacaaca |
226 |
Q |
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| T |
43695224 |
aacaaacctaactgttttaactaacttgaattaaaatacaaca |
43695266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8156277 - 8156201
Alignment:
| Q |
15 |
aatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
93 |
Q |
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||||||||| |||||||||||||| |||||| ||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
8156277 |
aatgatttagggagaaattgagaga--aaagagttagattgaatggattgtaattctatattctcattagtgaatgaaa |
8156201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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