View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_66 (Length: 291)

Name: NF18982_high_66
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_66
NF18982_high_66
[»] chr5 (16 HSPs)
chr5 (10-84)||(7221618-7221692)
chr5 (167-275)||(32309480-32309588)
chr5 (168-262)||(10299898-10299992)
chr5 (89-200)||(41034428-41034535)
chr5 (145-265)||(1649560-1649678)
chr5 (99-202)||(25002014-25002113)
chr5 (168-264)||(42224664-42224760)
chr5 (170-265)||(20526764-20526859)
chr5 (99-145)||(30325883-30325929)
chr5 (103-197)||(7585064-7585154)
chr5 (82-143)||(30892235-30892296)
chr5 (99-143)||(1649561-1649605)
chr5 (85-141)||(17190604-17190660)
chr5 (97-145)||(28490729-28490777)
chr5 (83-127)||(28611771-28611815)
chr5 (91-143)||(40971453-40971505)
[»] chr7 (11 HSPs)
chr7 (97-226)||(46994369-46994494)
chr7 (85-145)||(6579997-6580057)
chr7 (99-275)||(37489902-37490074)
chr7 (84-145)||(27888407-27888468)
chr7 (85-141)||(27949402-27949458)
chr7 (83-143)||(41873429-41873489)
chr7 (144-202)||(24845479-24845537)
chr7 (85-143)||(36738585-36738643)
chr7 (91-143)||(20954807-20954859)
chr7 (83-143)||(24539248-24539308)
chr7 (83-127)||(34281066-34281110)
[»] chr2 (19 HSPs)
chr2 (89-275)||(19193501-19193683)
chr2 (144-265)||(37077970-37078091)
chr2 (82-264)||(31494219-31494395)
chr2 (82-226)||(19953444-19953584)
chr2 (83-262)||(43400146-43400321)
chr2 (167-261)||(42669802-42669896)
chr2 (85-145)||(12989316-12989376)
chr2 (91-244)||(30706300-30706449)
chr2 (83-143)||(37228627-37228687)
chr2 (97-135)||(8009522-8009560)
chr2 (167-201)||(42763773-42763807)
chr2 (101-143)||(43400146-43400188)
chr2 (97-142)||(15508923-15508968)
chr2 (83-143)||(5139963-5140023)
chr2 (212-264)||(6980129-6980181)
chr2 (91-143)||(20459031-20459083)
chr2 (168-264)||(42182900-42182996)
chr2 (192-264)||(45554578-45554650)
chr2 (97-145)||(45554684-45554732)
[»] chr3 (21 HSPs)
chr3 (91-264)||(27243056-27243225)
chr3 (98-275)||(7640602-7640775)
chr3 (147-275)||(49720054-49720182)
chr3 (172-264)||(50661599-50661691)
chr3 (89-145)||(52123955-52124011)
chr3 (82-145)||(41451887-41451950)
chr3 (84-143)||(43657879-43657938)
chr3 (83-246)||(44225827-44225986)
chr3 (167-264)||(8475165-8475262)
chr3 (84-145)||(24734830-24734891)
chr3 (91-145)||(20791421-20791475)
chr3 (168-226)||(43657069-43657127)
chr3 (85-143)||(54186924-54186982)
chr3 (81-143)||(54187055-54187117)
chr3 (91-144)||(14236145-14236198)
chr3 (90-143)||(27243047-27243100)
chr3 (82-143)||(46575942-46576003)
chr3 (82-126)||(13809076-13809120)
chr3 (99-143)||(29235658-29235702)
chr3 (192-264)||(37776800-37776872)
chr3 (91-143)||(52951485-52951537)
[»] chr1 (15 HSPs)
chr1 (77-265)||(28274796-28274980)
chr1 (97-274)||(18157039-18157210)
chr1 (144-274)||(21977188-21977318)
chr1 (91-244)||(50424866-50425015)
chr1 (144-246)||(5602609-5602711)
chr1 (83-145)||(39974193-39974255)
chr1 (91-143)||(30787396-30787448)
chr1 (89-143)||(13388335-13388389)
chr1 (144-202)||(21970327-21970385)
chr1 (173-274)||(14340999-14341100)
chr1 (89-145)||(8899139-8899195)
chr1 (89-125)||(11987771-11987807)
chr1 (101-145)||(19101612-19101656)
chr1 (99-143)||(28274797-28274841)
chr1 (163-259)||(52158669-52158765)
[»] scaffold0005 (1 HSPs)
scaffold0005 (91-274)||(296837-297016)
[»] chr4 (13 HSPs)
chr4 (91-274)||(27654478-27654657)
chr4 (144-274)||(24106696-24106826)
chr4 (91-230)||(51904616-51904751)
chr4 (89-145)||(8109081-8109137)
chr4 (84-275)||(42862414-42862601)
chr4 (91-265)||(5994868-5995038)
chr4 (86-143)||(16318926-16318981)
chr4 (99-143)||(6540234-6540278)
chr4 (83-143)||(24834573-24834633)
chr4 (89-145)||(24834703-24834759)
chr4 (81-133)||(37306397-37306449)
chr4 (85-133)||(37315560-37315608)
chr4 (89-145)||(39471282-39471338)
[»] chr6 (12 HSPs)
chr6 (144-275)||(12690252-12690383)
chr6 (143-275)||(29610285-29610417)
chr6 (169-265)||(25326841-25326937)
chr6 (169-265)||(26159376-26159472)
chr6 (98-141)||(3984250-3984293)
chr6 (83-133)||(10060854-10060904)
chr6 (167-228)||(26170963-26171024)
chr6 (83-143)||(32122790-32122850)
chr6 (83-145)||(1392752-1392814)
chr6 (191-260)||(6109886-6109955)
chr6 (192-264)||(5106309-5106381)
chr6 (192-256)||(34905355-34905419)
[»] chr8 (15 HSPs)
chr8 (144-244)||(45218566-45218666)
chr8 (144-259)||(9953718-9953833)
chr8 (144-230)||(28485430-28485516)
chr8 (167-262)||(27799278-27799373)
chr8 (167-265)||(45524948-45525046)
chr8 (84-145)||(16983519-16983580)
chr8 (144-262)||(13105370-13105487)
chr8 (99-202)||(24683644-24683743)
chr8 (92-145)||(5980004-5980057)
chr8 (88-141)||(35151727-35151780)
chr8 (97-145)||(24055932-24055980)
chr8 (192-276)||(28413966-28414050)
chr8 (99-143)||(28700564-28700608)
chr8 (99-143)||(33440630-33440674)
chr8 (168-264)||(35689491-35689587)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 7221618 - 7221692
Alignment:
Q  10 attattctactaacattcagctattagtgtttgagtcttggtgtagtattatgtggactacatgataactagcaa 84  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7221618 attattctactaacattcagctattagtggttgagtcttggtgtagtattatgtggactacatgataactagcaa 7221692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 32309588 - 32309480
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtca 266  Q
    ||||||||| |||||||| |||||| ||||||| || ||| |||  |||| ||| |||||||||| ||| | |||||| ||||||||||||||||||||     
T  32309588 cacactttgaaaatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaagagagtgtct 32309489  T
Q  267 ttagcattc 275  Q
     ||||||||    
T  32309488 ctagcattc 32309480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 10299992 - 10299898
Alignment:
Q  168 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagt 262  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| |  |||||| |||||||||  ||| |||  ||| | |||||||||||||||    
T  10299992 acactttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagagtgttgaaaagagagt 10299898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 41034428 - 41034535
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctca 188  Q
    |||||||| ||||||||||||| |||||||| || |||| ||||||||| |    |||| |||||||| | || ||| ||||||||||||||||||  ||    
T  41034428 aatgctacaaacactctcttttcaacactctatccaacactcactttctaa----ttggcttaaatcatggtgggtctcacactttggaaatgggttcca 41034523  T
Q  189 cttaaagtggtg 200  Q
    |||||| |||||    
T  41034524 cttaaaatggtg 41034535  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 1649678 - 1649560
Alignment:
Q  145 tggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 244  Q
    |||||||||| ||| || ||| ||||||||  |||||| || ||||||||||||| | |||| |||  |||||||| ||||||| || ||| ||||||||    
T  1649678 tggtttaaattaaggtg-gtctcacactttaaaaatggttc-cacttaaagtggtagagcatacattaatttcatccaataagatagtgagtgttagaga 1649581  T
Q  245 aaatgttgaaaagagagtgtc 265  Q
     | ||||||||||||||||||    
T  1649580 gagtgttgaaaagagagtgtc 1649560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 25002014 - 25002113
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 198  Q
    |||||||||||| |||||||| || |||| ||||||||| |||||    |||||||||   || ||| |||||||||||||||||   ||||||||||||    
T  25002014 acactctcttttcaacactctctccaacactcactttctaattgg----tttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtgg 25002109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 42224664 - 42224760
Alignment:
Q  168 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||||||||||  | ||| |||||||||||| ||| ||| ||||||| ||||||| |||| ||| | |||||| | || | ||||||||||||    
T  42224664 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacctaataaaagagtgagtgctagagagagtgctcaaaagagagtgt 42224760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 20526859 - 20526764
Alignment:
Q  170 actttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    |||||| |||||||| ||||  |||||| |||| |||| || ||||||||| || ||||||   || |||| ||||| ||||||||||||||||||    
T  20526859 actttgaaaatgggtttcacgaaaagtgatgggtcatgtattgatttcatcaaacaagagaataagtgttaaagaaagtgttgaaaagagagtgtc 20526764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 30325883 - 30325929
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||||||||| |||||||| ||||| | |||||||||||||||||    
T  30325883 acactctcttttgaacactctctctaatactcactttcttattggtt 30325929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 7585154 - 7585064
Alignment:
Q  103 tctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtg 197  Q
    |||||||| ||||||||| | |||| ||||||| ||||| |||    ||||| ||| || ||| ||||| |||||||||||| ||||||||||||    
T  7585154 tctcttttcaacactcttccaaacactcactttattatttgtt----taaattaaggtgagtctcacacattggaaatgggtttcacttaaagtg 7585064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 30892296 - 30892235
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||||||  |||||||||||| || |||||| ||||||| ||||| || ||||||    
T  30892296 caagagaaatgctaggaacactctctttctagcactctctctaacactcactctcctattgg 30892235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1649561 - 1649605
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||||    
T  1649561 acactctcttttcaacactctctctaacactcactatcttattgg 1649605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 17190604 - 17190660
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttatt 141  Q
    |||||||||||  |||||||||||| || |||||| ||||||| |||||||| ||||    
T  17190604 gagaaatgctatgaacactctctttctagcactctctctaacactcactttcctatt 17190660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 28490729 - 28490777
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  28490729 caacactctcttttgaacactctctctaatactcactctcttattggtt 28490777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 28611771 - 28611815
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaaca 127  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||    
T  28611771 aagagaaatgctagcaacactctcttttgagcactctctctaaca 28611815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 40971453 - 40971505
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  40971453 tgctagcaacactctcttttgaacactctatctaacactcactattttattgg 40971505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 46994369 - 46994494
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagt 196  Q
    |||||||||||||||||| |||| ||||||| ||||||| ||||||| |    ||||||| | || ||| |||||||||||||||| | |||||||||||    
T  46994369 caacactctctttttaacgctctctctaacactcacttttttattggct----taaatcatggtgggtctcacactttggaaatggatatcacttaaagt 46994464  T
Q  197 ggtggggcatgcatagatttcatctaataa 226  Q
    |||||| ||| ||| |||||||||||||||    
T  46994465 ggtgggtcatacattgatttcatctaataa 46994494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 6579997 - 6580057
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||| ||||||||||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  6579997 gagatatgctaccaacactctcttttgaacactctctctaatactcactctcttattggtt 6580057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 37490074 - 37489902
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 198  Q
    |||||||||||| |||||||| || |||| |||||| ||||||||||    ||||| ||| |  ||| ||||||||||| ||| ||  |||||||  |||    
T  37490074 acactctcttttcaacactctctcaaacactcacttacttattggtt----taaatgaaggtcggtctcacactttggagatgagttccacttaatatgg 37489979  T
Q  199 tggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 275  Q
    |||| ||| |||  |||| | | |||||   || ||| ||| |||| |||||||||||||||||||| |||||||||    
T  37489978 tgggacatacattcatttaaaccaataaacaagtgagtgtttgagagaatgttgaaaagagagtgtccttagcattc 37489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 27888468 - 27888407
Alignment:
Q  84 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||| ||||||| |||||||||||||| | |||||| ||||||| ||||| |||||||||||    
T  27888468 agaggaatgctagcaacactctcttttgagcactctctctaacactcactctcttattggtt 27888407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 27949458 - 27949402
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttatt 141  Q
    ||||||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||    
T  27949458 gagaaatgctagcaacactctcttttgaacactctctctaatactcactctcttatt 27949402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 41873429 - 41873489
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||||||  |||||||||||| || |||||| ||||||| ||||||| |||||||    
T  41873429 aagagaaatgctaggaacactctctttctagcactctctctaacactcacttttttattgg 41873489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 24845479 - 24845537
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggg 202  Q
    |||| |||||||| | || ||| ||||||||||||||||||  ||||||||||||||||    
T  24845479 ttggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtggg 24845537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 36738643 - 36738585
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||| ||  ||||||||||||||| |||||||||||||| ||||| || ||||||    
T  36738643 gagaaatgttaagaacactctctttttagcactctttctaacactcactctcctattgg 36738585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 20954859 - 20954807
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||| |||||||||||||| |||||||| || |||| ||||||| |||||||    
T  20954859 tgctagcaacactctcttttcaacactctctcaaacactcacttttttattgg 20954807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 24539308 - 24539248
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||||| | ||||||||||||  ||||||| ||||||| ||||| | |||||||    
T  24539308 aagagaaatgctagcgacactctcttttggacactctctctaacactcactcttttattgg 24539248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 34281110 - 34281066
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaaca 127  Q
    ||||||||||||| |||||||||||||| |||| ||| |||||||    
T  34281110 aagagaaatgctatcaacactctcttttgaacattctctctaaca 34281066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 19193501 - 19193683
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctca 188  Q
    ||||||| |||||||||||||| |||||||| || |||| ||||||||| |    || |||||||||| | || ||| || ||||||||||| ||| |||    
T  19193501 aatgctagcaacactctcttttcaacactctctccaacactcactttctaa----ttagtttaaatcatggtgggtctcatactttggaaataggtttca 19193596  T
Q  189 cttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 275  Q
    |||||||||||||| ||| ||| | ||| ||| |||||||||  ||| |||  ||| | ||||||||||||||||||  ||||||||    
T  19193597 cttaaagtggtgggtcatacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagagagtgtctctagcattc 19193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 37078091 - 37077970
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||| ||| || ||| ||||| |||||||||| |  |||||||||||||||| ||| ||   ||| |||| |||||||||| | | |||||||    
T  37078091 ttggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaattacatccaataagagagtgtgtgttagag 37077992  T
Q  244 aaaatgttgaaaagagagtgtc 265  Q
    ||| ||||||||||||||||||    
T  37077991 aaagtgttgaaaagagagtgtc 37077970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 264
Target Start/End: Complemental strand, 31494395 - 31494219
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatg 181  Q
    |||||| | ||||| |||||||||||||| ||||||||    |||| ||||||  ||||||| |    ||||||||| || ||| ||||| |||||||||    
T  31494395 caagagtagtgctagcaacactctcttttcaacactctcctaaacactcacttcattattggct----taaatcaaggtgggtctcacacattggaaatg 31494300  T
Q  182 ggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||  |||||||||| ||||| ||| |||   ||||||| |||||||||| ||| |||||||  | |||||||||||||||||    
T  31494299 ggttccacttaaagtagtgggacatacattattttcatccaataagagagtgagtgttagag--agtgttgaaaagagagtgt 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 19953584 - 19953444
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatg 181  Q
    |||||| ||||||| ||||||||||||||||||| | | || || | ||||||| ||||||| |    |||||||   || ||| |||||||||||||||    
T  19953584 caagagtaatgctagcaacactctctttttaacattttctccaatactcacttttttattggat----taaatcatagtgagtctcacactttggaaatg 19953489  T
Q  182 ggtctcacttaaagtggtggggcatgcatagatttcatctaataa 226  Q
    |||  |||||||||||||||| ||| ||| | ||||||| |||||    
T  19953488 ggttccacttaaagtggtgggtcatacattggtttcatccaataa 19953444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 43400321 - 43400146
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgg 182  Q
    ||||| ||||||| |||||||||||||| ||||||||    |||| ||| ||| |||||||||    ||||||||| || ||  ||||| |||  ||| |    
T  43400321 aagagtaatgctagcaacactctcttttcaacactctcctaaacactcattttattattggtt----taaatcaaggtgggtttcacacattgataatag 43400226  T
Q  183 gtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagt 262  Q
    ||  |||||||||||||||| ||| || ||| ||||||| ||||||| || ||| |||||||| | |||||||||||||||    
T  43400225 gttccacttaaagtggtgggacatacactag-tttcatccaataagaaagtgagtgttagagagagtgttgaaaagagagt 43400146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 42669802 - 42669896
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagag 261  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||| ||||  ||| ||||||| |  ||| |||  ||| | ||||||||||||||    
T  42669802 cacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaaatgagtgttgaagagagtgttgaaaagagag 42669896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 12989376 - 12989316
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  12989376 gagaagtgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 12989316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 30706449 - 30706300
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| |||||||||||||| |||||||| || |||| ||||||| ||    |||||||||||| ||| || ||| || || ||| ||||| ||  || |    
T  30706449 tgctagcaacactctcttttcaacactctctcaaacactcactttatt----gttggtttaaattaaggtgggtctcatacattgaaaatgagttccatt 30706354  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 244  Q
    |||| ||||| | ||| |||  |||||||| |||||||||| ||| ||||||||    
T  30706353 taaactggtgagacatacattaatttcatcaaataagagagtgagtgttagaga 30706300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 37228687 - 37228627
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||| || ||||||||||||||||||| | ||||||||||| || ||||||| |||||||    
T  37228687 aagaggaaggctaccaacactctcttttgagcactctttctagcactcacttttttattgg 37228627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 8009522 - 8009560
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcacttt 135  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  8009522 caacactctcttttgaacactctttctaacactcacttt 8009560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 42763807 - 42763773
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtgg 201  Q
    ||||||||||||||||||||||| |||||||||||    
T  42763807 cacactttggaaatgggtctcacataaagtggtgg 42763773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 43400146 - 43400188
Alignment:
Q  101 actctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||| |||||||| ||||||| |||||||||||||||    
T  43400146 actctcttttcaacactctctctaacactcactttcttattgg 43400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 15508923 - 15508968
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattg 142  Q
    |||||||||||||| |||||||||||||||| ||||| | ||||||    
T  15508923 caacactctcttttgaacactctttctaacactcactcttttattg 15508968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 5139963 - 5140023
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||||||  |||||||||||| || |||||| ||||||| ||||| || ||||||    
T  5139963 aagagaaatgctaggaacactctctttctagcactctctctaacactcactctcctattgg 5140023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 6980181 - 6980129
Alignment:
Q  212 gatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    ||||||| |||||||||||| |||  ||||||||| |||| ||||||||||||    
T  6980181 gatttcaactaataagagagtgagtattagagaaagtgttcaaaagagagtgt 6980129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 20459083 - 20459031
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||| |||||||||||||| |||||||| || | || |||||||||||||||    
T  20459083 tgctagcaacactctcttttcaacactctctccaccactcactttcttattgg 20459031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 42182996 - 42182900
Alignment:
Q  168 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||||||||||  | ||| |||||||||||| ||| ||| ||||||| | ||||| |||| ||| | |||||| | || | ||||||||||||    
T  42182996 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgt 42182900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 45554650 - 45554578
Alignment:
Q  192 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    ||||||||||| ||| ||| ||||||||| ||||| |||| ||| | |||||| | |||||||||| ||||||    
T  45554650 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgt 45554578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 45554732 - 45554684
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||||||||||| |||| ||| ||||| | |||||||||||||||||    
T  45554732 caacactctcttttgaacattctctctaatactcactttcttattggtt 45554684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 264
Target Start/End: Complemental strand, 27243225 - 27243056
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| |||||||||||||| |||||||||||||| | ||||| ||| ||||| |    ||||||||  || |||  |||||||||||||||  | |||     
T  27243225 tgctagcaacactctcttttgaacactctttctaatactcactctctcattgggt----taaatcaatgtgggtcatacactttggaaatggaacccaca 27243130  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||||||| ||||||| ||||| ||| ||||| |||| ||| |||||||| | |||| ||||||||||||    
T  27243129 taaagtggtgggacatgcattgattttatccaataaaagagtgagtgttagagagagtgttcaaaagagagtgt 27243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 275
Target Start/End: Original strand, 7640602 - 7640775
Alignment:
Q  98 aacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtg 197  Q
    ||||||||||||| ||||||||  | |||| |||||| ||||||||||    | ||||||| || ||| ||||||| |||||| |||  ||||||| |||    
T  7640602 aacactctcttttcaacactctcacaaacactcacttccttattggtt----tcaatcaaggtgagtctcacacttaggaaataggttccacttaatgtg 7640697  T
Q  198 gtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 275  Q
    || || ||| |||  |||||||| ||||||| ||| || |||||||  | ||||||||||||||||||  ||||||||    
T  7640698 gtaggacatacattaatttcatccaataagaaagcaagtgttagagtgagtgttgaaaagagagtgtccctagcattc 7640775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 49720054 - 49720182
Alignment:
Q  147 gtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaa 246  Q
    |||||||| ||| || ||| ||||||||||||||||||  |||||||| |||||||  || |||  |||| ||| ||||||  || ||| ||| |||| |    
T  49720054 gtttaaatgaaggtgggtctcacactttggaaatgggttccacttaaaatggtgggatatacattcatttaatccaataagcaagtgagtgtttgagaga 49720153  T
Q  247 atgttgaaaagagagtgtcattagcattc 275  Q
     |||||||||| ||||||| |||||||||    
T  49720154 gtgttgaaaagtgagtgtccttagcattc 49720182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 50661599 - 50661691
Alignment:
Q  172 tttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||||||  | ||| |||||||||||| ||||||| ||||| ||||||||| ||||  || |||||||| | |||| ||||||||||||    
T  50661599 tttggaaatggaacccacataaagtggtgggacatgcattgattttatctaataaaagagtaagtgttagagagagtgtttaaaagagagtgt 50661691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 52123955 - 52124011
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  52123955 aatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtt 52124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 41451887 - 41451950
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  41451887 caagagcaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 41451950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 43657938 - 43657879
Alignment:
Q  84 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||| ||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  43657938 agagtaatgctagcaacactctctttttaacactgtttccaacactcactttctaattgg 43657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 44225827 - 44225986
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgg 182  Q
    ||||| ||||||| ||||| | |||||  ||||||||| | |||| ||||||| |||||||    ||||||| |||||| ||| ||||| ||| ||||||    
T  44225827 aagagtaatgctagcaacaatatctttccaacactcttccaaacattcactttattattgg----tttaaataaagctgggtctcacacattgaaaatgg 44225922  T
Q  183 gtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaa 246  Q
    ||  ||||||||||| |||| ||| || ||| ||||||| |||||||||| ||| ||| ||||||    
T  44225923 gttccacttaaagtgatgggacatacactag-tttcatccaataagagagtgagtgttggagaaa 44225986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 8475262 - 8475165
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    ||||||||||||||||||  || |||||| |||| | ||| |||   ||||||| |||||||||| ||  ||||||||| ||||| ||||||||||||    
T  8475262 cacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataagagagtgaatgttagagaagatgtttaaaagagagtgt 8475165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 24734891 - 24734830
Alignment:
Q  84 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  24734891 agagcaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 24734830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 20791475 - 20791421
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||| || ||||||||||| |||||||| ||||| | |||||||||||||||||    
T  20791475 tgctagcaccactctcttttgaacactctctctaatactcactttcttattggtt 20791421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 43657069 - 43657127
Alignment:
Q  168 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataa 226  Q
    |||||||||||||||  ||||| |||||||||||| ||| ||| ||||||||| |||||    
T  43657069 acactttggaaatggaactcacataaagtggtgggacatacattgatttcatcaaataa 43657127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 54186924 - 54186982
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||||  |||||||||||| ||||||||| ||||||| ||||| || ||||||    
T  54186924 gagaaatgctaagaacactctctttctaacactctctctaacattcactctcctattgg 54186982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 54187117 - 54187055
Alignment:
Q  81 gcaagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||| |||||   ||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  54187117 gcaagagaagtgctatggacactctctttctaacactctctctaacactcactctcttattgg 54187055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 14236198 - 14236145
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggt 144  Q
    ||||| ||||||||| |||| |||||||||||||| | ||||||| ||||||||    
T  14236198 tgctagcaacactctgttttgaacactctttctaatactcacttttttattggt 14236145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 27243047 - 27243100
Alignment:
Q  90 atgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  27243047 atgctagcaacactctcttttgaacactctctctaacactcactcttttattgg 27243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 46575942 - 46576003
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||| ||||||| ||||||||||| || |||||||| || |||| ||||| |||||||||    
T  46575942 caagaggaatgctatcaacactctctcttcaacactctctcaaacactcactctcttattgg 46576003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 13809076 - 13809120
Alignment:
Q  82 caagagaaatgctaccaacactctctttttaacactctttctaac 126  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||    
T  13809076 caagagaaatgctagcaacactctcttttacacactctctctaac 13809120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 29235658 - 29235702
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  29235658 acactctctttctaacactctctctaacactcactctcttattgg 29235702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 37776800 - 37776872
Alignment:
Q  192 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||| || ||| ||| ||||||||||||||| |||| ||| | | |||||| |||||||||| ||||||    
T  37776800 aaagtggtaggacatacattgatttcatctaataaaagagtgagtgctggagaaagtgttgaaaagtgagtgt 37776872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 52951537 - 52951485
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||| ||||||||||||||||||||||| |||| || ||||| ||| |||||    
T  52951537 tgctagcaacactctctttttaacactctctctagcactcactctctcattgg 52951485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 28274980 - 28274796
Alignment:
Q  77 actagcaagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttgg 176  Q
    ||||||||||| | |||||  ||||||||||||| |||||||| |  ||||  |||||| |||    ||||||||||||||| || ||| ||||| ||||    
T  28274980 actagcaagagtagtgctagtaacactctcttttcaacactctcttaaacacccactttatta----ttggtttaaatcaaggtgggtctcacacattgg 28274885  T
Q  177 aaatgggtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    ||||||||  ||||||| ||| |||| ||| || ||| ||||||| |||||||||| ||| |||||||| | ||||||||||||||||||    
T  28274884 aaatgggttccacttaaggtgatgggacatacactag-tttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtc 28274796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 274
Target Start/End: Complemental strand, 18157210 - 18157039
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagt 196  Q
    |||||||||||||| |||| ||| || || | |||||| ||||||||||      ||||||| || ||| ||||||||||||||| ||  ||||||||||    
T  18157210 caacactctcttttcaacattctctcaaatactcacttccttattggttt-----aatcaag-tgggtctcacactttggaaatgtgttccacttaaagt 18157117  T
Q  197 ggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcatt 274  Q
    |||||| ||| |||  |||||||| ||||| | || | | |||||||| | ||||||||||||||||||  |||||||    
T  18157116 ggtgggacatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatt 18157039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 21977318 - 21977188
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||||||| |  ||| ||||| ||||||||||||  |||||||||| ||||| ||| |||   ||||||| ||||||| || |||  ||||||    
T  21977318 ttggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacattagtttcatcaaataagaaagtgagttttagag 21977219  T
Q  244 aaaatgttgaaaagagagtgtcattagcatt 274  Q
    | | ||||||||||||| ||||  |||||||    
T  21977218 agagtgttgaaaagagaatgtccctagcatt 21977188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 50424866 - 50425015
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| ||||||||||||||   |||||| ||||||| ||||||| ||||||| |    ||||||||  || |||  |||||||||||||||  || ||     
T  50424866 tgctagcaacactctcttttaggcactctctctaacattcacttttttattgggt----taaatcaatgtgggtcatacactttggaaatggaacttaca 50424961  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 244  Q
    ||||||||||||| ||| || ||||| ||| ||||| |||| ||| ||||||||    
T  50424962 taaagtggtggggtatggattgattttatccaataaaagagtgagtgttagaga 50425015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 5602609 - 5602711
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||| ||  || ||| ||||||||||||||  || ||||||||||||||||| |||  ||  |||||||| ||||||||||  || |||||||    
T  5602609 ttggtttaaattaaagtgggtctcacactttggaaataagtttcacttaaagtggtgggacatatattaatttcatccaataagagagtaagtgttagag 5602708  T
Q  244 aaa 246  Q
    |||    
T  5602709 aaa 5602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 39974193 - 39974255
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| |||||||||||    
T  39974193 aagagtaatgctaacaacactctcttttgaacattctttctaatactcactctcttattggtt 39974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 30787396 - 30787448
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||| ||||||||||||| ||||||||||||||||  |||| |||||||||    
T  30787396 tgctactaacactctcttttcaacactctttctaacacacactctcttattgg 30787448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 13388335 - 13388389
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||| |||||||||||||| || ||||| ||||||| ||||||| |||||||    
T  13388335 aatgctagcaacactctcttttgaatactctctctaacactcacttttttattgg 13388389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 21970327 - 21970385
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggg 202  Q
    ||||||||||||||| || ||| ||||| ||| ||||||||  ||||||||||||||||    
T  21970327 ttggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtggtggg 21970385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 14340999 - 14341100
Alignment:
Q  173 ttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagca 272  Q
    ||||||||||||  |||||||||||||||| |||  ||   ||||||| ||||| | |  ||| |||||||| | ||||||||||| |||||||||| ||    
T  14340999 ttggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaagaaagtgtcattaaca 14341098  T
Q  273 tt 274  Q
    ||    
T  14341099 tt 14341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 8899195 - 8899139
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||||| ||||| |||||||| |||||||| ||||| | ||||| |||||||||||    
T  8899195 aatgctagcaacaatctcttttgaacactctctctaatactcactctcttattggtt 8899139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 11987807 - 11987771
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaa 125  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  11987807 aatgctagcaacactctcttttaaacactctttctaa 11987771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 19101612 - 19101656
Alignment:
Q  101 actctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||    
T  19101612 actctcttttgaacactctctctaatactcactttcttattggtt 19101656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 28274797 - 28274841
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||||    
T  28274797 acactctcttttcaacactctctctaacactcactctcttattgg 28274841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 52158765 - 52158669
Alignment:
Q  163 gtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagag 259  Q
    ||||||||||||| ||||||||| ||| |||||||||  | |  |||| ||||||||| || ||||||| | | |||||||| |  |||||||||||    
T  52158765 gtcccacactttgtaaatgggtcccacgtaaagtggtaagacccgcattgatttcatccaacaagagagtgggtgttagagagagcgttgaaaagag 52158669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 274
Target Start/End: Complemental strand, 297016 - 296837
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| |||||||||||||| |||||||| || |||| ||||||  |||    ||||||||||| ||| || ||| ||||| ||||||||||||  ||||    
T  297016 tgctagcaacactctcttttcaacactctctcaaacactcacttcatta----ttggtttaaatgaaggtgggtctcacacattggaaatgggttccact 296921  T
Q  191 taaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcatt 274  Q
    ||| |||||||| ||| || ||| ||||||| |||||||||| ||| |||||||| | ||||||||||| ||||||  |||||||    
T  296920 taaggtggtgggacatacactag-tttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtccctagcatt 296837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 274
Target Start/End: Complemental strand, 27654657 - 27654478
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| |||||||||||||| |||||||| || |||| ||| ||| |||||||||    ||||||||| ||  |  ||||| ||||||||||||  ||||    
T  27654657 tgctagcaacactctcttttcaacactctctcaaacactcaatttattattggtt----taaatcaaggtggatttcacacgttggaaatgggttccact 27654562  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcatt 274  Q
    |||||||||||| ||| |||   ||| ||| |||||||||  ||| |||||||| | ||||||||||||||||||  |||||||    
T  27654561 taaagtggtgggacatacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 24106696 - 24106826
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||||||| || |||  |||| || |||||| ||  ||||||||||  |||| |||||||   ||||||| |||||||||| | | |||||||    
T  24106696 ttggtttaaatcaaggtgggtcttacacattagaaatgagttccacttaaagtcatgggacatgcattagtttcatccaataagagagtgggtgttagag 24106795  T
Q  244 aaaatgttgaaaagagagtgtcattagcatt 274  Q
    | | |||||||||||||||||||||||||||    
T  24106796 agagtgttgaaaagagagtgtcattagcatt 24106826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 51904616 - 51904751
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| |||||||||||||| |||||||| ||||||| | || |||||||||| |    ||||||| | || ||| ||||||||| |||| |||  ||||    
T  51904616 tgctagcaacactctcttttcaacactctctctaacacttacattcttattggct----taaatcatggtgggtctcacactttgtaaataggttccact 51904711  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagaga 230  Q
    ||||||| |||| ||| ||| |||||||||||||||||||    
T  51904712 taaagtgatgggtcatacattgatttcatctaataagaga 51904751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 8109137 - 8109081
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  8109137 aatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtt 8109081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 275
Target Start/End: Original strand, 42862414 - 42862601
Alignment:
Q  84 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatggg 183  Q
    |||| ||||||| |||||||||||||| | |||| | |||| || ||||| | ||||||| ||    |||||||  | |||  ||||||||| ||||||     
T  42862414 agaggaatgctagcaacactctcttttgagcactatatctagcactcactcttttattgggtg----aaatcaatttatgtttcacactttgaaaatgga 42862509  T
Q  184 tctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 275  Q
     | ||| |||||||||||| ||| ||| ||||||| | ||||| | || ||| | |||||||| || | |||||||||||| ||||||||||    
T  42862510 acccacataaagtggtgggacatacattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaagagagtgttattagcattc 42862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 5994868 - 5995038
Alignment:
Q  91 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 190  Q
    ||||| ||||| |||||||| |||||||| || |||| ||||||||| ||||  |    ||||||| | || ||| ||||| ||||||||||||  ||||    
T  5994868 tgctagcaacagtctcttttcaacactctctccaacattcactttctaattgact----taaatcatggtgggtctcacacattggaaatgggttccact 5994963  T
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    |||||||||| | ||| |||   ||| ||| |||||||||  ||| |||| ||| | ||||||||||||| ||||    
T  5994964 taaagtggtgagtcatacattagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtc 5995038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 16318981 - 16318926
Alignment:
Q  86 agaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    |||||||||| |||||||||  ||| ||||||||||| |||||||||||||| |||||    
T  16318981 agaaatgctagcaacactct--tttcaacactctttccaacaatcactttctaattgg 16318926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 6540234 - 6540278
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||||||||||||||| |||||  |||| |||||||||    
T  6540234 acactctctttttaacactctttgtaacatccactctcttattgg 6540278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 24834573 - 24834633
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||||| |||||||| |||||| ||||||| ||||||  |||| || |||||||    
T  24834573 aagagaaatgctagcaacactcactttttgacactctctctaacgctcacatttttattgg 24834633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 24834759 - 24834703
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||||| |||||||||||||| ||| |||| ||||| | ||||| |||||||||||    
T  24834759 aatgctagcaacactctcttttaaactctctctctaatagtcactctcttattggtt 24834703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 37306397 - 37306449
Alignment:
Q  81 gcaagagaaatgctaccaacactctctttttaacactctttctaacaatcact 133  Q
    |||||||||||||||  |||||||||||| || |||||| ||||||| |||||    
T  37306397 gcaagagaaatgctaggaacactctctttctagcactctctctaacactcact 37306449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 37315560 - 37315608
Alignment:
Q  85 gagaaatgctaccaacactctctttttaacactctttctaacaatcact 133  Q
    ||||||||||| |||||||||||||| | |||||| ||||||| |||||    
T  37315560 gagaaatgctagcaacactctcttttgagcactctctctaacactcact 37315608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 39471338 - 39471282
Alignment:
Q  89 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||||| |||||||||||||| |||| ||| ||||| | ||||| |||||||||||    
T  39471338 aatgctaacaacactctcttttaaacattctctctaatactcactctcttattggtt 39471282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 12690383 - 12690252
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||||||| || ||| |||||||||||||| | |  |||||||||||||| | |||||||  |||||||| ||||| ||||| || |||||||    
T  12690383 ttggtttaaatcaaggtgggtctcacactttggaaatagattccacttaaagtggtgagacatgcattaatttcatccaataaaagagcaagtgttagag 12690284  T
Q  244 aaaatgttgaaaagagagtgtcattagcattc 275  Q
    | | |||| |||| ||||||||  ||||||||    
T  12690283 agagtgtttaaaatagagtgtccctagcattc 12690252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 29610285 - 29610417
Alignment:
Q  143 gttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttaga 242  Q
    |||||||||||| ||  || ||| ||||| || ||||| |||  |||||||||||||||| ||| |||  |||| | ||||||||  || ||| ||| ||    
T  29610285 gttggtttaaatgaatgtgggtctcacacattagaaattggttccacttaaagtggtgggacatacattcatttaaactaataagcaagtgagtgtttga 29610384  T
Q  243 gaaaatgttgaaaagagagtgtcattagcattc 275  Q
    || | ||||||||||||||||||||||||||||    
T  29610385 gagagtgttgaaaagagagtgtcattagcattc 29610417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 25326937 - 25326841
Alignment:
Q  169 cactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    ||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||    
T  25326937 cactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtc 25326841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 26159472 - 26159376
Alignment:
Q  169 cactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    ||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||    
T  26159472 cactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtc 26159376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 3984250 - 3984293
Alignment:
Q  98 aacactctctttttaacactctttctaacaatcactttcttatt 141  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  3984250 aacactctctttttaacactttttctaacattcactttcttatt 3984293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 10060854 - 10060904
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcact 133  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||||||||||    
T  10060854 aagaggaatgctagcaacactctcttttgaacactctttataacaatcact 10060904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 26170963 - 26171024
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataaga 228  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| |||||||    
T  26170963 cacactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataaga 26171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 32122790 - 32122850
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||||| |||||||||||||| ||||||||||| | || ||||||  |||||||    
T  32122790 aagagaaatgctaacaacactctcttttcaacactctttccaccactcacttatttattgg 32122850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 1392814 - 1392752
Alignment:
Q  83 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    ||||| ||||||| |||||||||||||| ||||| || ||||| | ||||| |||||||||||    
T  1392814 aagagtaatgctagcaacactctcttttgaacaccctatctaatactcactctcttattggtt 1392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 6109955 - 6109886
Alignment:
Q  191 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagaga 260  Q
    ||||||||| || ||||||| ||||| ||  ||||| ||| |||| ||| ||||||||||||||||||||    
T  6109955 taaagtggtaggacatgcattgattttattcaataaaagaacgagtgtttgagaaaatgttgaaaagaga 6109886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 5106381 - 5106309
Alignment:
Q  192 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    ||||||||||| ||| ||| ||||| ||| ||||| | || ||| |||||||||| |||||||||| ||||||    
T  5106381 aaagtggtgggacatacattgattttatccaataaaaaagtgagtgttagagaaagtgttgaaaagtgagtgt 5106309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 34905419 - 34905355
Alignment:
Q  192 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaa 256  Q
    ||||||||||| ||| ||| ||||||||| ||||| |||| ||| |||||||| | |||||||||    
T  34905419 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaa 34905355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 45218566 - 45218666
Alignment:
Q  144 ttggtttaaatcaagctgtgtcc-cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttaga 242  Q
    ||||||||||||||| || |||| |||| |||||||||||||  |||||||||||||||| || |||| ||||||||| ||||| |||||||| ||||||    
T  45218566 ttggtttaaatcaaggtg-gtcctcacattttggaaatgggttccacttaaagtggtgggacacgcattgatttcatccaataaaagagcgagtgttaga 45218664  T
Q  243 ga 244  Q
    ||    
T  45218665 ga 45218666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 9953718 - 9953833
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 243  Q
    ||||||||||||||| ||  || ||||||||||||||| ||  |||||||||||||||| ||  |||  ||||||||  ||||||||| ||| ||||||     
T  9953718 ttggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatcccataagagagtgagtgttagaa 9953817  T
Q  244 aaaatgttgaaaagag 259  Q
    |||||||| |||||||    
T  9953818 aaaatgtttaaaagag 9953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 28485430 - 28485516
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagaga 230  Q
    ||||||||||| ||  || ||| ||||||||||||||||||  |||||||||||||||| ||| |||  |||||||| |||||||||    
T  28485430 ttggtttaaattaatgtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagaga 28485516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 27799278 - 27799373
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagt 262  Q
    ||||| |||||||| |||  |||||||||||||||| ||| |||   ||||||| ||||| |||| ||  |||||||||| |||||||||||||||    
T  27799278 cacacattggaaataggttccacttaaagtggtgggacatacattagtttcatcaaataaaagagtgatcgttagagaaattgttgaaaagagagt 27799373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 45524948 - 45525046
Alignment:
Q  167 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 265  Q
    ||||||||||||||||||  |||| ||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||    
T  45524948 cacactttggaaatgggttccactcaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtc 45525046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 16983580 - 16983519
Alignment:
Q  84 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  16983580 agagtaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 16983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 13105370 - 13105487
Alignment:
Q  144 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttaga 242  Q
    ||||||||||||||| || ||| ||||| |||||||||||| || |||||| | ||||| ||| || ||| ||||||||||||| ||||| || |||| |    
T  13105370 ttggtttaaatcaagatgggtctcacacattggaaatgggt-tcccttaaaatcgtgggacatacactag-tttcatctaataaaagagcaagtgttaaa 13105467  T
Q  243 gaaaatgttgaaaagagagt 262  Q
    || | || ||||||||||||    
T  13105468 gagagtgctgaaaagagagt 13105487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 24683743 - 24683644
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 198  Q
    |||||||||||| |||||| | || |||| ||||||||| ||||| |    ||||||| | || ||| |||| |||||||||||||  ||||||||||||    
T  24683743 acactctcttttcaacactatctccaacactcactttctgattggct----taaatcatgatgggtctcacattttggaaatgggttccacttaaagtgg 24683648  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 5980057 - 5980004
Alignment:
Q  92 gctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  5980057 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 5980004  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 35151727 - 35151780
Alignment:
Q  88 aaatgctaccaacactctctttttaacactctttctaacaatcactttcttatt 141  Q
    |||||||| |||||||||||||| |||||||| | ||| | |||||||||||||    
T  35151727 aaatgctagcaacactctcttttgaacactctatttaatattcactttcttatt 35151780  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24055932 - 24055980
Alignment:
Q  97 caacactctctttttaacactctttctaacaatcactttcttattggtt 145  Q
    |||||||||||||| |||||| | ||||||| ||||| |||||||||||    
T  24055932 caacactctcttttgaacactttctctaacactcactctcttattggtt 24055980  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 28413966 - 28414050
Alignment:
Q  192 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattct 276  Q
    ||||||||||| ||| ||| ||||||||| ||||| | || ||| | |||||| | |||||||||| ||||||  ||||||||||    
T  28413966 aaagtggtgggacatacattgatttcatcgaataaaaaagtgagcgctagagagagtgttgaaaagtgagtgttgttagcattct 28414050  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 28700564 - 28700608
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  28700564 acactctctttctaacactctctctaacactcactctcttattgg 28700608  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 33440674 - 33440630
Alignment:
Q  99 acactctctttttaacactctttctaacaatcactttcttattgg 143  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  33440674 acactctctttataacactctctctaacattcactctcttattgg 33440630  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 35689587 - 35689491
Alignment:
Q  168 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 264  Q
    |||||||| ||||||  ||||| |||||||||||| ||| ||| ||||||||| ||||| | || ||| | |||||| | || | ||||||||||||    
T  35689587 acactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgt 35689491  T

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